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Biosketch / Results /

Peter D'Eustachio

Professor, Department of Biochemistry and Molecular Pharmacology
Professor, Department of Medicine


Contact Info

Address
227 East 30th Street
New York, NY 10016

212/263-5779
Peter.D'Eustachio@nyumc.org

Research Interests

Systems biology and bioinformatics

Guidelines for the functional annotation of microRNAs using the Gene Ontology
Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth C. Guidelines for the functional annotation of microRNAs using the Gene Ontology. RNA. 2016 Feb 25;22(5):667-676 (1965542)

Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework
Arighi, Cecilia; Shamovsky, Veronica; Masci, Anna Maria; Ruttenberg, Alan; Smith, Barry; Natale, Darren A; Wu, Cathy; D'Eustachio, Peter. Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework. PLoS one. 2015 Apr 20;10(3):e0122978-e0122978 e0122978 (1542542)

Gene Ontology Consortium: Going forward
Blake, JA; Christie, KR; Dolan, ME; Drabkin, HJ; Hill, DP; Ni, L; Sitnikov, D; Burgess, S; Buza, T; Gresham, C; McCarthy, F; Pillai, L; Wang, H; Carbon, S; Dietze, H; Lewis, SE; Mungall, CJ; Munoz-Torres, MC; Feuermann, M; Gaudet, P; Basu, S; Chisholm, RL; Dodson, RJ; Fey, P; Mi, H; Thomas, PD; Muruganujan, A; Poudel, S; Hu, JC; Aleksander, SA; McIntosh, BK; Renfro, DP; Siegele, DA; Attrill, H; Brown, NH; Tweedie, S; Lomax, J; Osumi-Sutherland, D; Parkinson, H; Roncaglia, P; Lovering, RC; Talmud, PJ; Humphries, SE; Denny, P; Campbell, NH; Foulger, RE; Chibucos, MC; Gwinn Giglio, M; Chang, HY; Finn, R; Fraser, M; Mitchell, A; Nuka, G; Pesseat, S; Sangrador, A; Scheremetjew, M; Young, SY; Stephan, R; Harris, MA; Oliver, SG; Rutherford, K; Wood, V; Bahler, J; Lock, A; Kersey, PJ; McDowall, MD; Staines, DM; Dwinell, M; Shimoyama, M; Laulederkind, S; Hayman, GT; Wang, SJ; Petri, V; D'Eustachio, P; Matthews, L; Balakrishnan, R; Binkley, G; Cherry, JM; Costanzo, MC; Demeter, J; Dwight, SS; Engel, SR; Hitz, BC; Inglis, DO; Lloyd, P; Miyasato, SR; Paskov, K; Roe, G; Simison, M; Nash, RS; Skrzypek, MS; Weng, S; Wong, ED; Berardini, TZ; Li, D; Huala, E; Argasinska, J; Arighi, C; Auchincloss, A; Axelsen, K; Argoud-Puy, G; Bateman, A; Bely, B; Blatter, MC; Bonilla, C; Bougueleret, L; Boutet, E; Breuza, L; Bridge, A; Britto, R; Casals, C; Cibrian-Uhalte, E; Coudert, E; Cusin, I; Duek-Roggli, P; Estreicher, A; Famiglietti, L; Gane, P; Garmiri, P; Gos, A; Gruaz-Gumowski, N; Hatton-Ellis, E; Hinz, U; Hulo, C; Huntley, R; Jungo, F; Keller, G; Laiho, K; Lemercier, P; Lieberherr, D; MacDougall, A; Magrane, M; Martin, M; Masson, P; Mutowo, P; O'Donovan, C; Pedruzzi, I; Pichler, K; Poggioli, D; Poux, S; Rivoire, C; Roechert, B; Sawford, T; Schneider, M; Shypitsyna, A; Stutz, A; Sundaram, S; Tognolli, M; Wu, C; Xenarios, I; Chan, J; Kishore, R; Sternberg, PW; Van Auken, K; Muller, HM; Done, J; Li, Y; Howe, D; Westerfield, M. Gene Ontology Consortium: Going forward. Nucleic acids research. 2015 ;43(D1):D1049-D1056 (1515672)

The Reactome pathway Knowledgebase
Fabregat, Antonio; Sidiropoulos, Konstantinos; Garapati, Phani; Gillespie, Marc; Hausmann, Kerstin; Haw, Robin; Jassal, Bijay; Jupe, Steven; Korninger, Florian; McKay, Sheldon; Matthews, Lisa; May, Bruce; Milacic, Marija; Rothfels, Karen; Shamovsky, Veronica; Webber, Marissa; Weiser, Joel; Williams, Mark; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter. The Reactome pathway Knowledgebase. Nucleic acids research. 2015 Dec 9;44(D1):D481-D487 (1877672)

Gramene 2016: comparative plant genomics and pathway resources
Tello-Ruiz, Marcela K; Stein, Joshua; Wei, Sharon; Preece, Justin; Olson, Andrew; Naithani, Sushma; Amarasinghe, Vindhya; Dharmawardhana, Palitha; Jiao, Yinping; Mulvaney, Joseph; Kumari, Sunita; Chougule, Kapeel; Elser, Justin; Wang, Bo; Thomason, James; Bolser, Daniel M; Kerhornou, Arnaud; Walts, Brandon; Fonseca, Nuno A; Huerta, Laura; Keays, Maria; Tang, Y Amy; Parkinson, Helen; Fabregat, Antonio; McKay, Sheldon; Weiser, Joel; D'Eustachio, Peter; Stein, Lincoln; Petryszak, Robert; Kersey, Paul J; Jaiswal, Pankaj; Ware, Doreen. Gramene 2016: comparative plant genomics and pathway resources. Nucleic acids research. 2015 Nov 8;44(D1):D1133-D1140 (1834722)