Jef D. Boeke

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Jef D. Boeke, Ph.D.

Professor; Dir Institute for Systems Genetics (ISG)
Department of Biochemistry and Molecular Pharmacology

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Total synthesis of a functional designer eukaryotic chromosome
Annaluru, Narayana; Muller, Heloise; Mitchell, Leslie A; Ramalingam, Sivaprakash; Stracquadanio, Giovanni; Richardson, Sarah M; Dymond, Jessica S; Kuang, Zheng; Scheifele, Lisa Z; Cooper, Eric M; Cai, Yizhi; Zeller, Karen; Agmon, Neta; Han, Jeffrey S; Hadjithomas, Michalis; Tullman, Jennifer; Caravelli, Katrina; Cirelli, Kimberly; Guo, Zheyuan; London, Viktoriya; Yeluru, Apurva; Murugan, Sindurathy; Kandavelou, Karthikeyan; Agier, Nicolas; Fischer, Gilles; Yang, Kun; Martin, J Andrew; Bilgel, Murat; Bohutski, Pavlo; Boulier, Kristin M; Capaldo, Brian J; Chang, Joy; Charoen, Kristie; Choi, Woo Jin; Deng, Peter; DiCarlo, James E; Doong, Judy; Dunn, Jessilyn; Feinberg, Jason I; Fernandez, Christopher; Floria, Charlotte E; Gladowski, David; Hadidi, Pasha; Ishizuka, Isabel; Jabbari, Javaneh; Lau, Calvin Y L; Lee, Pablo A; Li, Sean; Lin, Denise; Linder, Matthias E; Ling, Jonathan; Liu, Jaime; Liu, Jonathan; London, Mariya; Ma, Henry; Mao, Jessica; McDade, Jessica E; McMillan, Alexandra; Moore, Aaron M; Oh, Won Chan; Ouyang, Yu; Patel, Ruchi; Paul, Marina; Paulsen, Laura C; Qiu, Judy; Rhee, Alex; Rubashkin, Matthew G; Soh, Ina Y; Sotuyo, Nathaniel E; Srinivas, Venkatesh; Suarez, Allison; Wong, Andy; Wong, Remus; Xie, Wei Rose; Xu, Yijie; Yu, Allen T; Koszul, Romain; Bader, Joel S; Boeke, Jef D; Chandrasegaran, Srinivasan
2014 Apr;344(6179):55-58, Science
— id: 886912, year: 2014, vol: 344, page: 55, stat: Journal Article,

Mobile DNA: an evolving field
Belfort, Marlene; Marraffini, Luciano; Macfarlan, Todd; Boeke, Jef; Slotkin, Keith; Malik, Harmit; Maquat, Lynne
2014 ;5:16-16, Mobile DNA
— id: 1032612, year: 2014, vol: 5, page: 16, stat: Journal Article,

Expression and detection of LINE-1 ORF-encoded proteins
Dai, Lixin; LaCava, John; Taylor, Martin S; Boeke, Jef D
2014 ;4:e29319-e29319 e29319, Mobile genetic elements
— id: 1073522, year: 2014, vol: 4, page: e29319, stat: Journal Article,

Human Genomics. Sleeping dogs of the genome
Gorbunova, Vera; Boeke, Jef D; Helfand, Stephen L; Sedivy, John M
2014 Dec;346(6214):1187-1188, Science
— id: 1371272, year: 2014, vol: 346, page: 1187, stat: Journal Article,

High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast
Kuang, Zheng; Cai, Ling; Zhang, Xuekui; Ji, Hongkai; Tu, Benjamin P; Boeke, Jef D
2014 Aug;:1133-1138, Nature structural & molecular biology
— id: 1162832, year: 2014, vol: , page: 1133, stat: Journal Article,

RADOM, an Efficient In Vivo Method for Assembling Designed DNA Fragments up to 10 kb Long in Saccharomyces cerevisiae
Lin, Qiuhui; Jia, Bin; Mitchell, Leslie A; Luo, Jingchuan; Yang, Kun; Zeller, Karen I; Zhang, Wenqian; Xu, Zhuwei; Stracquadanio, Giovanni; Bader, Joel S; Boeke, Jef D; Yuan, Ying-Jin
2014 Jun;:0409121-0409122, ACS synthetic biology
— id: 1031032, year: 2014, vol: , page: 0409121, stat: Journal Article,

Circular permutation of a synthetic eukaryotic chromosome with the telomerator
Mitchell, Leslie A; Boeke, Jef D
2014 Nov;:14984-14994, Proceedings of the National Academy of Sciences of the United States of America
— id: 1341502, year: 2014, vol: , page: 14984, stat: Journal Article,

Long Interspersed Element-1 Protein Expression Is a Hallmark of Many Human Cancers
Rodic, Nemanja; Sharma, Reema; Sharma, Rajni; Zampella, John; Dai, Lixin; Taylor, Martin S; Hruban, Ralph H; Iacobuzio-Donahue, Christine A; Maitra, Anirban; Torbenson, Michael S; Goggins, Michael; Shih, Ie-Ming; Duffield, Amy S; Montgomery, Elizabeth A; Gabrielson, Edward; Netto, George J; Lotan, Tamara L; De Marzo, Angelo M; Westra, William; Binder, Zev A; Orr, Brent A; Gallia, Gary L; Eberhart, Charles G; Boeke, Jef D; Harris, Chris R; Burns, Kathleen H
2014 Mar;:1280-1286 e01339, American journal of pathology
— id: 886902, year: 2014, vol: , page: 1280, stat: Journal Article,

Characterisation of cytoplasmic DNA complementary to non-retroviral RNA viruses in human cells
Shimizu, Akira; Nakatani, Yoko; Nakamura, Takako; Jinno-Oue, Atsushi; Ishikawa, Osamu; Boeke, Jef D; Takeuchi, Yasuhiro; Hoshino, Hiroo
2014 ;4:5074-5074, Scientific reports
— id: 1018892, year: 2014, vol: 4, page: 5074, stat: Journal Article,

Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)
Benachenhou, Farid; Sperber, Goran O; Bongcam-Rudloff, Erik; Andersson, Goran; Boeke, Jef D; Blomberg, Jonas
2013 ;4(1):5-5, Mobile DNA
— id: 571502, year: 2013, vol: 4, page: 5, stat: Journal Article,

A quantitative analysis of histone methylation and acetylation isoforms from their deuteroacetylated derivatives: application to a series of knockout mutants
Fiedler, Katherine L; Bheda, Poonam; Dai, Junbiao; Boeke, Jef D; Wolberger, Cynthia; Cotter, Robert J
2013 May;48(5):608-615, Journal of mass spectrometry : JMS
— id: 571472, year: 2013, vol: 48, page: 608, stat: Journal Article,

TE-array--a high throughput tool to study transposon transcription
Gnanakkan, Veena P; Jaffe, Andrew E; Dai, Lixin; Fu, Jie; Wheelan, Sarah J; Levitsky, Hyam I; Boeke, Jef D; Burns, Kathleen H
2013 ;14:869-869, BMC genomics
— id: 886882, year: 2013, vol: 14, page: 869, stat: Journal Article,

Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription
Huang, Qing; Purzycka, Katarzyna J; Lusvarghi, Sabrina; Li, Donghui; Legrice, Stuart F J; Boeke, Jef D
2013 Mar;19(3):320-332, RNA
— id: 571512, year: 2013, vol: 19, page: 320, stat: Journal Article,

Using functional proteome microarrays to study protein lysine acetylation
Lu, Jin-Ying; Lin, Yu-Yi; Boeke, Jef D; Zhu, Heng
2013 ;981:151-165, Methods in molecular biology
— id: 571492, year: 2013, vol: 981, page: 151, stat: Journal Article,

Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA
Mitchell, Leslie A; Cai, Yizhi; Taylor, Martin; Noronha, Anne Marie; Chuang, James; Dai, Lixin; Boeke, Jef D
2013 Aug;2(8):473-477, ACS synthetic biology
— id: 571482, year: 2013, vol: 2, page: 473, stat: Journal Article,

Kinetochore Function and Chromosome Segregation Rely On Critical Residues in Histones H3 and H4 in Budding Yeast
Ng, Tessie M; Lenstra, Tineke L; Duggan, Nicole; Jiang, Shuangying; Ceto, Steven; Holstege, Frank C P; Dai, Junbiao; Boeke, Jef D; Biggins, Sue
2013 Sep;:795-807, Genetics
— id: 571442, year: 2013, vol: , page: 795, stat: Journal Article,

Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model
O'Donnell, Kathryn A; An, Wenfeng; Schrum, Christina T; Wheelan, Sarah J; Boeke, Jef D
2013 Jul;110(29):E2706-E2713, Proceedings of the National Academy of Sciences of the United States of America
— id: 571462, year: 2013, vol: 110, page: E2706, stat: Journal Article,

A DNA Integrity Network in the Yeast Saccharomyces cerevisiae (vol 124, pg 1069, 2006)
Pan, Xuewen; Ye, Ping; Yuan, Daniel S.; Wang, Xiaoling; Bader, Joel S.; Boeke, Jef D.
2013 MAY 23;153(5):1165-1165, Cell
— id: 616572, year: 2013, vol: 153, page: 1165, stat: Journal Article,

Influence of RNA structural elements on Ty1 retrotransposition
Purzycka, Katarzyna J; Garfinkel, David J; Boeke, Jef D; Le Grice, Stuart F J
2013 Mar;3(2):e25060-e25060 e25060, Mobile genetic elements
— id: 571452, year: 2013, vol: 3, page: e25060, stat: Journal Article,

Affinity proteomics reveals human host factors implicated in discrete stages of LINE-1 retrotransposition
Taylor, Martin S; Lacava, John; Mita, Paolo; Molloy, Kelly R; Huang, Cheng Ran Lisa; Li, Donghui; Adney, Emily M; Jiang, Hua; Burns, Kathleen H; Chait, Brian T; Rout, Michael P; Boeke, Jef D; Dai, Lixin
2013 Nov;155(5):1034-1048, Cell
— id: 886872, year: 2013, vol: 155, page: 1034, stat: Journal Article,

Architectural Organization of the Metabolic Regulatory Enzyme Ghrelin-O-Acyltransferase
Taylor, Martin S; Ruch, Travis R; Hsiao, Po-Yuan; Hwang, Yousang; Zhang, Pingfeng; Dai, Lixin; Huang, Cheng Ran Lisa; Berndsen, Christopher E; Kim, Min-Sik; Pandey, Akhilesh; Wolberger, Cynthia; Marmorstein, Ronen; Machamer, Carolyn; Boeke, Jef D; Cole, Philip A
2013 Sep;:32211-32228, Journal of biological chemistry
— id: 571432, year: 2013, vol: , page: 32211, stat: Journal Article,

Genome-wide Consequences of Deleting Any Single Gene
Teng, Xinchen; Dayhoff-Brannigan, Margaret; Cheng, Wen-Chih; Gilbert, Catherine E; Sing, Cierra N; Diny, Nicola L; Wheelan, Sarah J; Dunham, Maitreya J; Boeke, Jef D; Pineda, Fernando J; Hardwick, J Marie
2013 Nov;:146-146, Molecular cell
— id: 615172, year: 2013, vol: , page: 146, stat: Journal Article,

tRNA genes rapidly change in evolution to meet novel translational demands
Yona, Avihu H; Bloom-Ackermann, Zohar; Frumkin, Idan; Hanson-Smith, Victor; Charpak-Amikam, Yoav; Feng, Qinghua; Boeke, Jef D; Dahan, Orna; Pilpel, Yitzhak
2013 ;2:e01339-e01339 e01339, eLife
— id: 886892, year: 2013, vol: 2, page: e01339, stat: Journal Article,

Assembling DNA fragments by USER fusion
Annaluru, Narayana; Muller, Heloise; Ramalingam, Sivaprakash; Kandavelou, Karthikeyan; London, Viktoriya; Richardson, Sarah M; Dymond, Jessica S; Cooper, Eric M; Bader, Joel S; Boeke, Jef D; Chandrasegaran, Srinivasan
2012 ;852:77-95, Methods in molecular biology
— id: 571652, year: 2012, vol: 852, page: 77, stat: Journal Article,

Biotinylation of lysine method identifies acetylated histone H3 lysine 79 in Saccharomyces cerevisiae as a substrate for Sir2
Bheda, Poonam; Swatkoski, Stephen; Fiedler, Katherine L; Boeke, Jef D; Cotter, Robert J; Wolberger, Cynthia
2012 Apr;109(16):E916-E925, Proceedings of the National Academy of Sciences of the United States of America
— id: 571592, year: 2012, vol: 109, page: E916, stat: Journal Article,

Human transposon tectonics
Burns, Kathleen H; Boeke, Jef D
2012 May;149(4):740-752, Cell
— id: 571562, year: 2012, vol: 149, page: 740, stat: Journal Article,

The Build-a-Genome course
Cooper, Eric M; Muller, Heloise; Chandrasegaran, Srinivasan; Bader, Joel S; Boeke, Jef D
2012 ;852:273-283, Methods in molecular biology
— id: 571622, year: 2012, vol: 852, page: 273, stat: Journal Article,

Strain construction and screening methods for a yeast histone H3/H4 mutant library
Dai, Junbiao; Boeke, Jef D
2012 ;833:1-14, Methods in molecular biology
— id: 571702, year: 2012, vol: 833, page: 1, stat: Journal Article,

Poly(A) binding protein C1 is essential for efficient L1 retrotransposition and affects L1 RNP formation
Dai, Lixin; Taylor, Martin S; O'Donnell, Kathryn A; Boeke, Jef D
2012 Nov;32(21):4323-4336, Molecular & cellular biology
— id: 571552, year: 2012, vol: 32, page: 4323, stat: Journal Article,

Live-cell studies of p300/CBP histone acetyltransferase activity and inhibition
Dancy, Beverley M; Crump, Nicholas T; Peterson, Daniel J; Mukherjee, Chandrani; Bowers, Erin M; Ahn, Young-Hoon; Yoshida, Minoru; Zhang, Jin; Mahadevan, Louis C; Meyers, David J; Boeke, Jef D; Cole, Philip A
2012 Sep;13(14):2113-2121, Chembiochem : a European journal of chemical biology
— id: 571542, year: 2012, vol: 13, page: 2113, stat: Journal Article,

The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion
Darby, Miranda M; Serebreni, Leo; Pan, Xuewen; Boeke, Jef D; Corden, Jeffry L
2012 May;32(10):1762-1775, Molecular & cellular biology
— id: 571602, year: 2012, vol: 32, page: 1762, stat: Journal Article,

The Saccharomyces cerevisiae SCRaMbLE system and genome minimization
Dymond, Jessica; Boeke, Jef
2012 May-Jun;3(3):168-171, Bioengineered bugs
— id: 571572, year: 2012, vol: 3, page: 168, stat: Journal Article,

Active transposition in genomes
Huang, Cheng Ran Lisa; Burns, Kathleen H; Boeke, Jef D
2012 ;46:651-675, Annual review of genetics
— id: 571522, year: 2012, vol: 46, page: 651, stat: Journal Article,

Rapid identification of monospecific monoclonal antibodies using a human proteome microarray
Jeong, Jun Seop; Jiang, Lizhi; Albino, Edisa; Marrero, Josean; Rho, Hee Sool; Hu, Jianfei; Hu, Shaohui; Vera, Carlos; Bayron-Poueymiroy, Diane; Rivera-Pacheco, Zully Ann; Ramos, Leonardo; Torres-Castro, Cecil; Qian, Jiang; Bonaventura, Joseph; Boeke, Jef D; Yap, Wendy Y; Pino, Ignacio; Eichinger, Daniel J; Zhu, Heng; Blackshaw, Seth
2012 Jun;11(6):O111.016253-O111.016253 O111.016253, Molecular & cellular proteomics
— id: 571672, year: 2012, vol: 11, page: O111.016253, stat: Journal Article,

Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK
Lin, Yu-yi; Kiihl, Samara; Suhail, Yasir; Liu, Shang-Yun; Chou, Yi-hsuan; Kuang, Zheng; Lu, Jin-ying; Khor, Chin Ni; Lin, Chi-Long; Bader, Joel S; Irizarry, Rafael; Boeke, Jef D
2012 Feb;482:251-255, Nature
— id: 571662, year: 2012, vol: 482, page: 251, stat: Journal Article,

Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots
Mularoni, Loris; Zhou, Yulian; Bowen, Tyson; Gangadharan, Sunil; Wheelan, Sarah J; Boeke, Jef D
2012 Apr;22(4):693-703, Genome research
— id: 571692, year: 2012, vol: 22, page: 693, stat: Journal Article,

Assembling large DNA segments in yeast
Muller, Heloise; Annaluru, Narayana; Schwerzmann, Joy Wu; Richardson, Sarah M; Dymond, Jessica S; Cooper, Eric M; Bader, Joel S; Boeke, Jef D; Chandrasegaran, Srinivasan
2012 ;852:133-150, Methods in molecular biology
— id: 571642, year: 2012, vol: 852, page: 133, stat: Journal Article,

A Sleeping Beauty mutagenesis screen reveals a tumor suppressor role for Ncoa2/Src-2 in liver cancer
O'Donnell, Kathryn A; Keng, Vincent W; York, Brian; Reineke, Erin L; Seo, Daekwan; Fan, Danhua; Silverstein, Kevin A T; Schrum, Christina T; Xie, Wei Rose; Mularoni, Loris; Wheelan, Sarah J; Torbenson, Michael S; O'Malley, Bert W; Largaespada, David A; Boeke, Jef D
2012 May;109(21):E1377-E1386, Proceedings of the National Academy of Sciences of the United States of America
— id: 571582, year: 2012, vol: 109, page: E1377, stat: Journal Article,

Design-A-Gene with GeneDesign
Richardson, Sarah M; Liu, Steffi; Boeke, Jef D; Bader, Joel S
2012 ;852:235-247, Methods in molecular biology
— id: 571632, year: 2012, vol: 852, page: 235, stat: Journal Article,

Polyubiquitin-sensor proteins reveal localization and linkage-type dependence of cellular ubiquitin signaling
Sims, Joshua J; Scavone, Francesco; Cooper, Eric M; Kane, Lesley A; Youle, Richard J; Boeke, Jef D; Cohen, Robert E
2012 Mar;9(3):303-309, Nature methods
— id: 571682, year: 2012, vol: 9, page: 303, stat: Journal Article,

Ghrelin O-acyltransferase assays and inhibition
Taylor, Martin S; Hwang, Yousang; Hsiao, Po-Yuan; Boeke, Jef D; Cole, Philip A
2012 ;514:205-228, Methods in enzymology
— id: 571532, year: 2012, vol: 514, page: 205, stat: Journal Article,

Lysine succinylation and lysine malonylation in histones
Xie, Zhongyu; Dai, Junbiao; Dai, Lunzhi; Tan, Minjia; Cheng, Zhongyi; Wu, Yeming; Boeke, Jef D; Zhao, Yingming
2012 May;11(5):100-107, Molecular & cellular proteomics
— id: 571612, year: 2012, vol: 11, page: 100, stat: Journal Article,

Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon
Yarrington, Robert M; Richardson, Sarah M; Lisa Huang, Cheng Ran; Boeke, Jef D
2012 Feb;190(2):523-535, Genetics
— id: 571712, year: 2012, vol: 190, page: 523, stat: Journal Article,

Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs
An, Wenfeng; Dai, Lixin; Niewiadomska, Anna Maria; Yetil, Alper; O'Donnell, Kathryn A; Han, Jeffrey S; Boeke, Jef D
2011 ;2(1):2-2, Mobile DNA
— id: 571792, year: 2011, vol: 2, page: 2, stat: Journal Article,

Genome remodeling
Cai, Yizhi; Boeke, Jef D
2011 Sep;29(9):807-808, Nature biotechnology
— id: 571752, year: 2011, vol: 29, page: 807, stat: Journal Article,

Effect of reverse transcriptase inhibitors on LINE-1 and Ty1 reverse transcriptase activities and on LINE-1 retrotransposition
Dai, Lixin; Huang, Qing; Boeke, Jef D
2011 ;12:18-18, BMC biochemistry
— id: 571772, year: 2011, vol: 12, page: 18, stat: Journal Article,

Synthetic chromosome arms function in yeast and generate phenotypic diversity by design
Dymond, Jessica S; Richardson, Sarah M; Coombes, Candice E; Babatz, Timothy; Muller, Heloise; Annaluru, Narayana; Blake, William J; Schwerzmann, Joy W; Dai, Junbiao; Lindstrom, Derek L; Boeke, Annabel C; Gottschling, Daniel E; Chandrasegaran, Srinivasan; Bader, Joel S; Boeke, Jef D
2011 Sep;477(7365):471-476, Nature
— id: 571732, year: 2011, vol: 477, page: 471, stat: Journal Article,

An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae
Hyland, Edel M; Molina, Henrik; Poorey, Kunal; Jie, Chunfa; Xie, Zhi; Dai, Junbiao; Qian, Jiang; Bekiranov, Stefan; Auble, David T; Pandey, Akhilesh; Boeke, Jef D
2011 Jun;25(12):1306-1319, Genes & development
— id: 571762, year: 2011, vol: 25, page: 1306, stat: Journal Article,

Acetylation of yeast AMPK controls intrinsic aging independently of caloric restriction
Lu, Jin-Ying; Lin, Yu-Yi; Sheu, Jin-Chuan; Wu, June-Tai; Lee, Fang-Jen; Chen, Yue; Lin, Min-I; Chiang, Fu-Tien; Tai, Tong-Yuan; Berger, Shelley L; Zhao, Yingming; Tsai, Keh-Sung; Zhu, Heng; Chuang, Lee-Ming; Boeke, Jef D
2011 Sep;146(6):969-979, Cell
— id: 571742, year: 2011, vol: 146, page: 969, stat: Journal Article,

Protein acetylation and aging
Lu, Jin-Ying; Lin, Yu-Yi; Zhu, Heng; Chuang, Lee-Ming; Boeke, Jef D
2011 Oct;3(10):911-912, Aging
— id: 571722, year: 2011, vol: 3, page: 911, stat: Journal Article,

Characterization of L1 retrotransposition with high-throughput dual-luciferase assays
Xie, Yi; Rosser, James M; Thompson, Tina L; Boeke, Jef D; An, Wenfeng
2011 Feb;39(3):e16-e16 e16, Nucleic acids research
— id: 571812, year: 2011, vol: 39, page: e16, stat: Journal Article,

Differential contributions of histone H3 and H4 residues to heterochromatin structure
Yu, Qun; Olsen, Lars; Zhang, Xinmin; Boeke, Jef D; Bi, Xin
2011 Jun;188(2):291-308, Genetics
— id: 571782, year: 2011, vol: 188, page: 291, stat: Journal Article,

Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor
Barnett, Brad P; Hwang, Yousang; Taylor, Martin S; Kirchner, Henriette; Pfluger, Paul T; Bernard, Vincent; Lin, Yu-yi; Bowers, Erin M; Mukherjee, Chandrani; Song, Woo-Jin; Longo, Patti A; Leahy, Daniel J; Hussain, Mehboob A; Tschop, Matthias H; Boeke, Jef D; Cole, Philip A
2010 Dec;330(6011):1689-1692, Science
— id: 571802, year: 2010, vol: 330, page: 1689, stat: Journal Article,

Making temperature-sensitive mutants
Ben-Aroya, Shay; Pan, Xuewen; Boeke, Jef D; Hieter, Philip
2010 ;470:181-204, Methods in enzymology
— id: 571822, year: 2010, vol: 470, page: 181, stat: Journal Article,

Specificity of the BRISC deubiquitinating enzyme is not due to selective binding to Lys63-linked polyubiquitin
Cooper, Eric M; Boeke, Jef D; Cohen, Robert E
2010 Apr;285(14):10344-10352, Journal of biological chemistry
— id: 571902, year: 2010, vol: 285, page: 10344, stat: Journal Article,

Yin and Yang of histone H2B roles in silencing and longevity: a tale of two arginines
Dai, Junbiao; Hyland, Edel M; Norris, Anne; Boeke, Jef D
2010 Nov;186(3):813-828, Genetics
— id: 571832, year: 2010, vol: 186, page: 813, stat: Journal Article,

Mobile interspersed repeats are major structural variants in the human genome
Huang, Cheng Ran Lisa; Schneider, Anna M; Lu, Yunqi; Niranjan, Tejasvi; Shen, Peilin; Robinson, Matoya A; Steranka, Jared P; Valle, David; Civin, Curt I; Wang, Tao; Wheelan, Sarah J; Ji, Hongkai; Boeke, Jef D; Burns, Kathleen H
2010 Jun;141(7):1171-1182, Cell
— id: 571852, year: 2010, vol: 141, page: 1171, stat: Journal Article,

CLONEQC: lightweight sequence verification for synthetic biology
Lee, Pablo A; Dymond, Jessica S; Scheifele, Lisa Z; Richardson, Sarah M; Foelber, Katrina J; Boeke, Jef D; Bader, Joel S
2010 May;38(8):2617-2623, Nucleic acids research
— id: 571872, year: 2010, vol: 38, page: 2617, stat: Journal Article,

Histone h3 exerts a key function in mitotic checkpoint control
Luo, Jianjun; Xu, Xinjing; Hall, Hana; Hyland, Edel M; Boeke, Jef D; Hazbun, Tony; Kuo, Min-Hao
2010 Jan;30(2):537-549, Molecular & cellular biology
— id: 571912, year: 2010, vol: 30, page: 537, stat: Journal Article,

A microarray-based genetic screen for yeast chronological aging factors
Matecic, Mirela; Smith, Daniel L; Pan, Xuewen; Maqani, Nazif; Bekiranov, Stefan; Boeke, Jef D; Smith, Jeffrey S
2010 Apr;6(4):e1000921-e1000921 e1000921, PLoS genetics
— id: 571862, year: 2010, vol: 6, page: e1000921, stat: Journal Article,

Silent information regulator 3: the Goldilocks of the silencing complex
Norris, Anne; Boeke, Jef D
2010 Jan;24(2):115-122, Genes & development
— id: 571892, year: 2010, vol: 24, page: 115, stat: Journal Article,

Trivalent arsenic inhibits the functions of chaperonin complex
Pan, Xuewen; Reissman, Stefanie; Douglas, Nick R; Huang, Zhiwei; Yuan, Daniel S; Wang, Xiaoling; McCaffery, J Michael; Frydman, Judith; Boeke, Jef D
2010 Oct;186(2):725-734, Genetics
— id: 571842, year: 2010, vol: 186, page: 725, stat: Journal Article,

GeneDesign 3.0 is an updated synthetic biology toolkit
Richardson, Sarah M; Nunley, Paul W; Yarrington, Robert M; Boeke, Jef D; Bader, Joel S
2010 May;38(8):2603-2606, Nucleic acids research
— id: 571882, year: 2010, vol: 38, page: 2603, stat: Journal Article,

Sir2 products and activities
Schramm, Vern L.; Boeke, Jef D.; Sauve, Anthony; Celic, Ivana
2010 JUN 22;:-, Official gazette of the United States Patent & Trademark Office. Patents
— id: 616632, year: 2010, vol: , page: , stat: Journal Article,

Plug and play modular strategies for synthetic retrotransposons
An, Wenfeng; Davis, Edward S; Thompson, Tina L; O'Donnell, Kathryn A; Lee, Chih-Yung; Boeke, Jef D
2009 Nov;49(3):227-235, Methods
— id: 571932, year: 2009, vol: 49, page: 227, stat: Journal Article,

Method for finding mutations caused by the insertion of repeated DNAs
Boeke, Jef D.
2009 JUN 9;:-, Official gazette of the United States Patent & Trademark Office. Patents
— id: 616692, year: 2009, vol: , page: , stat: Journal Article,

Manganese ion regulation of reverse transcriptase activity and methods of modulating same
Boeke, Jef D.; Bolton, Eric C.
2009 OCT 13;:-, Official gazette of the United States Patent & Trademark Office. Patents
— id: 616662, year: 2009, vol: , page: , stat: Journal Article,

Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course
Dymond, Jessica S; Scheifele, Lisa Z; Richardson, Sarah; Lee, Pablo; Chandrasegaran, Srinivasan; Bader, Joel S; Boeke, Jef D
2009 Jan;181(1):13-21, Genetics
— id: 571982, year: 2009, vol: 181, page: 13, stat: Journal Article,

HistoneHits: a database for histone mutations and their phenotypes
Huang, Hailiang; Maertens, Alexandra M; Hyland, Edel M; Dai, Junbiao; Norris, Anne; Boeke, Jef D; Bader, Joel S
2009 Apr;19(4):674-681, Genome research
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Targeting weight gain and glucose control with a designed Ghrelin O-acyltransferase inhibitor
Hwang, Yousang; Barnett, Brad; Taylor, Martin; Bowers, Erin; Mukherjee, Chandrama; Song, W-Jimmy; Hussain, Mehboob A.; Boeke, Jef D.; Cole, Philip
2009 AUG 16;238:803-803, Abstracts of papers (American Chemical Society)
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Transposon-mediated genome manipulation in vertebrates (vol 6, pg 415, 2009)
Ivics, Zoltan; Li, Meng Amy; Mates, Lajos; Boeke, Jef D.; Nagy, Andras; Bradley, Allan; Izsvak, Zsuzsanna
2009 JUL;6(7):546-546, Nature methods
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Transposon-mediated genome manipulation in vertebrates
Ivics, Zoltan; Li, Meng Amy; Mates, Lajos; Boeke, Jef D; Nagy, Andras; Bradley, Allan; Izsvak, Zsuzsanna
2009 Jun;6(6):415-422, Nature methods
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Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis
Lin, Yu-yi; Lu, Jin-ying; Zhang, Junmei; Walter, Wendy; Dang, Weiwei; Wan, Jun; Tao, Sheng-Ce; Qian, Jiang; Zhao, Yingming; Boeke, Jef D; Berger, Shelley L; Zhu, Heng
2009 Mar;136(6):1073-1084, Cell
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Retrotransposon overdose and genome integrity
Scheifele, Lisa Z; Cost, Gregory J; Zupancic, Margaret L; Caputo, Emerita M; Boeke, Jef D
2009 Aug;106(33):13927-13932, Proceedings of the National Academy of Sciences of the United States of America
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Reverse two-hybrid systems
Vidal, Marc; Boeke, Jef; Harlow, Ed
2009 OCT 13;:-, Official gazette of the United States Patent & Trademark Office. Patents
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Conditional activation of a single-copy L1 transgene in mice by Cre
An, Wenfeng; Han, Jeffrey S; Schrum, Christina M; Maitra, Anirban; Koentgen, Frank; Boeke, Jef D
2008 Jul;46(7):373-383, Genesis
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Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae
Ben-Aroya, Shay; Coombes, Candice; Kwok, Teresa; O'Donnell, Kathryn A; Boeke, Jef D; Hieter, Philip
2008 Apr;30(2):248-258, Molecular cell
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Retrotransposons - Natural and synthetic
Boeke, Jef D.; An, Wenfeng; Dai, Lixin; Davis, Edward S.; Han, Jeffrey S.; O'Donnell, Kathryn A.; Scheifele, Lisa Z.; Wheelan, Sarah J.
2008 ;2008:21-32, Research & perspectives in neurosciences
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Great exaptations
Burns, Kathleen H; Boeke, Jef D
2008 ;7(2):5-5, Journal of biology
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Histone H3 K56 hyperacetylation perturbs replisomes and causes DNA damage
Celic, Ivana; Verreault, Alain; Boeke, Jef D
2008 Aug;179(4):1769-1784, Genetics
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Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants
Dai, Junbiao; Hyland, Edel M; Yuan, Daniel S; Huang, Hailiang; Bader, Joel S; Boeke, Jef D
2008 Sep;134(6):1066-1078, Cell
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Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough
Han, Yefei; Lin, Yijie B; An, Wenfeng; Xu, Jie; Yang, Hung-Chih; O'Connell, Karen; Dordai, Dominic; Boeke, Jef D; Siliciano, Janet D; Siliciano, Robert F
2008 Aug;4(2):134-146, Cell host & microbe
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Plasmid-chromosome shuffling for non-deletion alleles in yeast
Huang, Zhiwei; Sucgang, Richard S; Lin, Yu-yi; Shi, Xiaomin; Boeke, Jef D; Pan, Xuewen
2008 Feb;5(2):167-169, Nature methods
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Visions and Challenges in Redesigning Life
Lentzos, Filippa; Bennett, Gaymon; Boeke, Jef; Endy, Drew; Rabinow, Paul
2008 SEP;3(3):311-323, Biosocieties
— id: 616712, year: 2008, vol: 3, page: 311, stat: Journal Article,

Microarray-based genetic screen defines SAW1, a gene required for Rad1/Rad10-dependent processing of recombination intermediates
Li, Fuyang; Dong, Junchao; Pan, Xuewen; Oum, Ji-Hyun; Boeke, Jef D; Lee, Sang Eun
2008 May;30(3):325-335, Molecular cell
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A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation
Lin, Yu-yi; Qi, Yan; Lu, Jin-ying; Pan, Xuewen; Yuan, Daniel S; Zhao, Yingming; Bader, Joel S; Boeke, Jef D
2008 Aug;22(15):2062-2074, Genes & development
— id: 572042, year: 2008, vol: 22, page: 2062, stat: Journal Article,

Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray
Meluh, Pamela B; Pan, Xuewen; Yuan, Daniel S; Tiffany, Carol; Chen, Ou; Sookhai-Mahadeo, Sharon; Wang, Xiaoling; Peyser, Brian D; Irizarry, Rafael; Spencer, Forrest A; Boeke, Jef D
2008 ;416:221-247, Methods in molecular biology
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Compensatory interactions between Sir3p and the nucleosomal LRS surface imply their direct interaction
Norris, Anne; Bianchet, Mario A; Boeke, Jef D
2008 Dec;4(12):e1000301-e1000301 e1000301, PLoS genetics
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Domesticated DNA transposon proteins mediate retrotransposon control
O'Donnell, Kathryn A; Boeke, Jef D
2008 Mar;18(3):331-333, Cell research
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A descent into the nuage: the maelstrom of transposon control
O'Donnell, Kathryn A; Burns, Kathleen H; Boeke, Jef D
2008 Aug;15(2):179-181, Developmental cell
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Response to Dr Stephen Cooper's 'On the use of metaphor to understand, explain, or rationalize redundant genes in yeast'
Pan, Xuewen; Yuan, Daniel; Ye, Ping; Bader, Joel; Boeke, Jef D.
2008 MAY;8(3):349-350, FEMS yeast research
— id: 616722, year: 2008, vol: 8, page: 349, stat: Journal Article,

Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions
Qi, Yan; Suhail, Yasir; Lin, Yu-yi; Boeke, Jef D; Bader, Joel S
2008 Dec;18(12):1991-2004, Genome research
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From the shards of a shattered genome, diversity
Scheifele, Lisa Z; Boeke, Jef D
2008 Aug;105(33):11593-11594, Proceedings of the National Academy of Sciences of the United States of America
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The incredible shrinking world of DNA microarrays
Wheelan, Sarah J; Martinez Murillo, Francisco; Boeke, Jef D
2008 Jul;4(7):726-732, Molecular bioSystems
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A critical role for the C-terminus of Nej1 protein in Lif1p association, DNA binding and non-homologous end-joining
Boeke, JD; Stoye, JP; Sulek, M; Yarrington, R; McGibbon, G; Boeke, J D; Junop, M
2007 Dec;6(12):1805-1818, DNA repair (Amsterdam)
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Mighty Piwis defend the germline against genome intruders
O'Donnell, Kathryn A; Boeke, Jef D
2007 Apr;129(1):37-44, Cell
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dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae
Pan, Xuewen; Yuan, Daniel S; Ooi, Siew-Loon; Wang, Xiaoling; Sookhai-Mahadeo, Sharon; Meluh, Pamela; Boeke, Jef D
2007 Feb;41(2):206-221, Methods
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Mn2+ suppressor mutations and biochemical communication between Ty1 reverse transcriptase and RNase H domains
Yarrington, Robert M; Chen, Jichao; Bolton, Eric C; Boeke, Jef D
2007 Sep;81(17):9004-9012, Journal of virology
— id: 572152, year: 2007, vol: 81, page: 9004, stat: Journal Article,

Efficient Tor signaling requires a functional class C Vps protein complex in Saccharomyces cerevisiae
Zurita-Martinez, Sara A; Puria, Rekha; Pan, Xuewen; Boeke, Jef D; Cardenas, Maria E
2007 Aug;176(4):2139-2150, Genetics
— id: 572142, year: 2007, vol: 176, page: 2139, stat: Journal Article,

Active retrotransposition by a synthetic L1 element in mice
An, Wenfeng; Han, Jeffrey S; Wheelan, Sarah J; Davis, Edward S; Coombes, Candice E; Ye, Ping; Triplett, Christina; Boeke, Jef D
2006 Dec;103(49):18662-18667, Proceedings of the National Academy of Sciences of the United States of America
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The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation
Celic, Ivana; Masumoto, Hiroshi; Griffith, Wendell P; Meluh, Pamela; Cotter, Robert J; Boeke, Jef D; Verreault, Alain
2006 Jul;16(13):1280-1289, Current biology. CB
— id: 572232, year: 2006, vol: 16, page: 1280, stat: Journal Article,

The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing
Fry, Christopher J; Norris, Anne; Cosgrove, Michael; Boeke, Jef D; Peterson, Craig L
2006 Dec;26(23):9045-9059, Molecular & cellular biology
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Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
Gandhi, T K B; Zhong, Jun; Mathivanan, Suresh; Karthick, L; Chandrika, K N; Mohan, S Sujatha; Sharma, Salil; Pinkert, Stefan; Nagaraju, Shilpa; Periaswamy, Balamurugan; Mishra, Goparani; Nandakumar, Kannabiran; Shen, Beiyi; Deshpande, Nandan; Nayak, Rashmi; Sarker, Malabika; Boeke, Jef D; Parmigiani, Giovanni; Schultz, Jorg; Bader, Joel S; Pandey, Akhilesh
2006 Mar;38(3):285-293, Nature genetics
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Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae
Kastenmayer, James P; Ni, Li; Chu, Angela; Kitchen, Lauren E; Au, Wei-Chun; Yang, Hui; Carter, Carole D; Wheeler, David; Davis, Ronald W; Boeke, Jef D; Snyder, Michael A; Basrai, Munira A
2006 Mar;16(3):365-373, Genome research
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Global synthetic-lethality analysis and yeast functional profiling
Ooi, Siew Loon; Pan, Xuewen; Peyser, Brian D; Ye, Ping; Meluh, Pamela B; Yuan, Daniel S; Irizarry, Rafael A; Bader, Joel S; Spencer, Forrest A; Boeke, Jef D
2006 Jan;22(1):56-63, Trends in genetics
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A DNA integrity network in the yeast Saccharomyces cerevisiae
Pan, Xuewen; Ye, Ping; Yuan, Daniel S; Wang, Xiaoling; Bader, Joel S; Boeke, Jef D
2006 Mar;124(5):1069-1081, Cell
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GeneDesign: rapid, automated design of multikilobase synthetic genes
Richardson, Sarah M; Wheelan, Sarah J; Yarrington, Robert M; Boeke, Jef D
2006 Apr;16(4):550-556, Genome research
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The biochemistry of sirtuins
Sauve, Anthony A; Wolberger, Cynthia; Schramm, Vern L; Boeke, Jef D
2006 ;75:435-465, Annual review of biochemistry
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Sir2 products and activities
Schramm, Vern L.; Boeke, Jef D.; Sauve, Anthony; Celic, Ivana
2006 JAN 17;:-, Official gazette of the United States Patent & Trademark Office. Patents
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Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription
Takahashi, Hidekazu; McCaffery, J Michael; Irizarry, Rafael A; Boeke, Jef D
2006 Jul;23(2):207-217, Molecular cell
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Reverse two-hybrid systems
Vidal, Marc; Boeke, Jef D.; Harlow, Ed
2006 APR 25;:-, Official gazette of the United States Patent & Trademark Office. Patents
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Stacking the deck: double-tiled DNA microarrays
Wheelan, Sarah J; Martinez-Murillo, Francisco; Irizarry, Rafael A; Boeke, Jef D
2006 Nov;3(11):903-907, Nature methods
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Transposon insertion site profiling chip (TIP-chip)
Wheelan, Sarah J; Scheifele, Lisa Z; Martinez-Murillo, Francisco; Irizarry, Rafael A; Boeke, Jef D
2006 Nov;103(47):17632-17637, Proceedings of the National Academy of Sciences of the United States of America
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Transposon technology and vertebrate functional genomics
An, Wenfeng; Boeke, Jef D
2005 ;6(12):361-361, Genome biology
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TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs
Bachman, Nurjana; Gelbart, Marnie E; Tsukiyama, Toshio; Boeke, Jef D
2005 Apr;19(8):955-964, Genes & development
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Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon
Bolton, Eric C; Coombes, Candice; Eby, Yolanda; Cardell, Mattias; Boeke, Jef D
2005 Mar;11(3):308-322, RNA
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Reconstitution of papillomavirus E2-mediated plasmid maintenance in Saccharomyces cerevisiae by the Brd4 bromodomain protein
Brannon, Angela R; Maresca, Julia A; Boeke, Jef D; Basrai, Munira A; McBride, Alison A
2005 Feb;102(8):2998-3003, Proceedings of the National Academy of Sciences of the United States of America
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An evaluation of detection methods for large lariat RNAs
Coombes, Candice E; Boeke, Jef D
2005 Mar;11(3):323-331, RNA
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Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant
Gelbart, Marnie E; Bachman, Nurjana; Delrow, Jeffrey; Boeke, Jef D; Tsukiyama, Toshio
2005 Apr;19(8):942-954, Genes & development
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LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?
Han, Jeffrey S; Boeke, Jef D
2005 Aug;27(8):775-784, Bioessays
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Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae
Hyland, Edel M; Cosgrove, Michael S; Molina, Henrik; Wang, Dongxia; Pandey, Akhilesh; Cottee, Robert J; Boeke, Jef D
2005 Nov;25(22):10060-10070, Molecular & cellular biology
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Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools
Peyser, Brian D; Irizarry, Rafael A; Tiffany, Carol W; Chen, Ou; Yuan, Daniel S; Boeke, Jef D; Spencer, Forrest A
2005 ;33(16):e140-e140 e140, Nucleic acids research
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Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution
Wheelan, Sarah J; Aizawa, Yasunori; Han, Jeffrey S; Boeke, Jef D
2005 Aug;15(8):1073-1078, Genome research
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Gene function prediction from congruent synthetic lethal interactions in yeast
Ye, Ping; Peyser, Brian D; Pan, Xuewen; Boeke, Jef D; Spencer, Forrest A; Bader, Joel S
2005 ;1:2005.0026-2005.0026, Molecular systems biology
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Improved microarray methods for profiling the Yeast Knockout strain collection
Yuan, Daniel S; Pan, Xuewen; Ooi, Siew Loon; Peyser, Brian D; Spencer, Forrest A; Irizarry, Rafael A; Boeke, Jef D
2005 ;33(12):e103-e103 e103, Nucleic acids research
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FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation
Arevalo-Rodriguez, Miguel; Pan, Xuewen; Boeke, Jef D; Heitman, Joseph
2004 Oct;3(5):1287-1296, Eukaryotic cell
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Structural basis for the mechanism and regulation of Sir2 enzymes
Avalos, Jose L; Boeke, Jef D; Wolberger, Cynthia
2004 Mar;13(5):639-648, Molecular cell
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Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes
Bachman, Nurjana; Eby, Yolanda; Boeke, Jef D
2004 Jul;14(7):1232-1247, Genome research
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Evolution: A is for adaptation
Boeke, Jef D
2004 Sep;431(7007):408-409, Nature
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Regulated nucleosome mobility and the histone code
Cosgrove, Michael S; Boeke, Jef D; Wolberger, Cynthia
2004 Nov;11(11):1037-1043, Nature structural & molecular biology
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A highly active synthetic mammalian retrotransposon
Han, Jeffrey S; Boeke, Jef D
2004 May;429(6989):314-318, Nature
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Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
Han, Jeffrey S; Szak, Suzanne T; Boeke, Jef D
2004 May;429(6989):268-274, Nature
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Ty1 mobilizes subtelomeric Y' elements in telomerase-negative Saccharomyces cerevisiae survivors
Maxwell, Patrick H; Coombes, Candice; Kenny, Alison E; Lawler, Joseph F; Boeke, Jef D; Curcio, M Joan
2004 Nov;24(22):9887-9898, Molecular & cellular biology
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A robust toolkit for functional profiling of the yeast genome
Pan, Xuewen; Yuan, Daniel S; Xiang, Dong; Wang, Xiaoling; Sookhai-Mahadeo, Sharon; Bader, Joel S; Hieter, Philip; Spencer, Forrest; Boeke, Jef D
2004 Nov;16(3):487-496, Molecular cell
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Molecular biology. Ring around the retroelement
Perlman, Philip S; Boeke, Jef D
2004 Jan;303(5655):182-184, Science
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A link between transcription and intermediary metabolism: a role for Sir2 in the control of acetyl-coenzyme A synthetase
Starai, V J; Takahashi, H; Boeke, J D; Escalante-Semerena, J C
2004 Apr;7(2):115-119, Current opinion in microbiology
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Quantified measures of systems robustness in yeast
Ye, P; Peyser, B; Pan, X; Boeke, JD; Spencer, FA; Bader, JS
2004 NOV;15:122A-122A, Molecular biology of the cell
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The unusual phylogenetic distribution of retrotransposons: a hypothesis
Boeke, Jef D
2003 Sep;13(9):1975-1983, Genome research
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Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: a genomic point of view
Bolton, Eric C; Boeke, Jef D
2003 Feb;13(2):254-263, Genome research
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Use of mixture models in a microarray-based screening procedure for detecting differentially represented yeast mutants
Irizarry, Rafael A; Ooi, Siew Loon; Wu, Zhijin; Boeke, Jef D
2003 ;2:Article1-Article1 Article1, Statistical applications in genetics & molecular biology
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DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray
Ooi, Siew Loon; Shoemaker, Daniel D; Boeke, Jef D
2003 Nov;35(3):277-286, Nature genetics
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Short-chain fatty acid activation by acyl-coenzyme A synthetases requires SIR2 protein function in Salmonella enterica and Saccharomyces cerevisiae
Starai, Vincent J; Takahashi, Hidekazu; Boeke, Jef D; Escalante-Semerena, Jorge C
2003 Feb;163(2):545-555, Genetics
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Identifying related L1 retrotransposons by analyzing 3 ' transduced sequences
Szak, ST; Pickeral, OK; Landsman, D; Boeke, JD
2003 ;4:-, Genome biology
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Identifying related L1 retrotransposons by analyzing 3' transduced sequences
Szak, Suzanne T; Pickeral, Oxana K; Landsman, David; Boeke, Jef D
2003 ;4(5):R30-R30 R30, Genome biology
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Structure of a Sir2 enzyme bound to an acetylated p53 peptide
Avalos, Jose L; Celic, Ivana; Muhammad, Shabazz; Cosgrove, Michael S; Boeke, Jef D; Wolberger, Cynthia
2002 Sep;10(3):523-535, Molecular cell
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Tn7-mediated mutagenesis of Saccharomyces cerevisiae genomic DNA in vitro
Bachman, Nurjana; Biery, Matthew C; Boeke, Jef D; Craig, Nancy L
2002 ;350:230-247, Methods in enzymology
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Putting Mobile DNA to Work: the Toolbox
Boeke, Jef D
Mobile DNA II : edited by Nancy L. Craig ... [et al.] Washington, D.C. : ASM Press, 2002,
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Inhibition of reverse transcription in vivo by elevated manganese ion concentration
Bolton, Eric C; Mildvan, Albert S; Boeke, Jef D
2002 Apr;9(4):879-889, Molecular cell
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Human L1 element target-primed reverse transcription in vitro
Cost, Gregory J; Feng, Qinghua; Jacquier, Alain; Boeke, Jef D
2002 Nov;21(21):5899-5910, EMBO journal
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Functional profiling of the Saccharomyces cerevisiae genome
Giaever, Guri; Chu, Angela M; Ni, Li; Connelly, Carla; Riles, Linda; Veronneau, Steeve; Dow, Sally; Lucau-Danila, Ankuta; Anderson, Keith; Andre, Bruno; Arkin, Adam P; Astromoff, Anna; El-Bakkoury, Mohamed; Bangham, Rhonda; Benito, Rocio; Brachat, Sophie; Campanaro, Stefano; Curtiss, Matt; Davis, Karen; Deutschbauer, Adam; Entian, Karl-Dieter; Flaherty, Patrick; Foury, Francoise; Garfinkel, David J; Gerstein, Mark; Gotte, Deanna; Guldener, Ulrich; Hegemann, Johannes H; Hempel, Svenja; Herman, Zelek; Jaramillo, Daniel F; Kelly, Diane E; Kelly, Steven L; Kotter, Peter; LaBonte, Darlene; Lamb, David C; Lan, Ning; Liang, Hong; Liao, Hong; Liu, Lucy; Luo, Chuanyun; Lussier, Marc; Mao, Rong; Menard, Patrice; Ooi, Siew Loon; Revuelta, Jose L; Roberts, Christopher J; Rose, Matthias; Ross-Macdonald, Petra; Scherens, Bart; Schimmack, Greg; Shafer, Brenda; Shoemaker, Daniel D; Sookhai-Mahadeo, Sharon; Storms, Reginald K; Strathern, Jeffrey N; Valle, Giorgio; Voet, Marleen; Volckaert, Guido; Wang, Ching-yun; Ward, Teresa R; Wilhelmy, Julie; Winzeler, Elizabeth A; Yang, Yonghong; Yen, Grace; Youngman, Elaine; Yu, Kexin; Bussey, Howard; Boeke, Jef D; Snyder, Michael; Philippsen, Peter; Davis, Ronald W; Johnston, Mark
2002 Jul;418(6896):387-391, Nature
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Ty1 defect in proteolysis at high temperature
Lawler, Joseph F Jr; Haeusser, Daniel P; Dull, Angie; Boeke, Jef D; Keeney, Jill B
2002 May;76(9):4233-4240, Journal of virology
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A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity
Lawler, Joseph F Jr; Merkulov, Gennady V; Boeke, Jef D
2002 Jan;76(1):346-354, Journal of virology
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SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylase localized to mitochondria
Onyango, Patrick; Celic, Ivana; McCaffery, J Michael; Boeke, Jef D; Feinberg, Andrew P
2002 Oct;99(21):13653-13658, Proceedings of the National Academy of Sciences of the United States of America
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A core nucleosome surface crucial for transcriptional silencing
Park, Jeong-Hyun; Cosgrove, Michael S; Youngman, Elaine; Wolberger, Cynthia; Boeke, Jef D
2002 Oct;32(2):273-279, Nature genetics
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Telomeric and rDNA silencing in Saccharomyces cerevisiae are dependent on a nuclear NAD(+) salvage pathway
Sandmeier, Joseph J; Celic, Ivana; Boeke, Jef D; Smith, Jeffrey S
2002 Mar;160(3):877-889, Genetics
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SIR2 family of NAD(+)-dependent protein deacetylases
Smith, Jeffrey S; Avalos, Jose; Celic, Ivana; Muhammad, Shabazz; Wolberger, Cynthia; Boeke, Jef D
2002 ;353:282-300, Methods in enzymology
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Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine
Starai, V J; Celic, I; Cole, R N; Boeke, J D; Escalante-Semerena, J C
2002 Dec;298(5602):2390-2392, Science
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Human l1 retrotransposition is associated with genetic instability in vivo
Symer, David E; Connelly, Carla; Szak, Suzanne T; Caputo, Emerita M; Cost, Gregory J; Parmigiani, Giovanni; Boeke, Jef D
2002 Aug;110(3):327-338, Cell
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Molecular archeology of L1 insertions in the human genome
Szak, Suzanne T; Pickeral, Oxana K; Makalowski, Wojciech; Boguski, Mark S; Landsman, David; Boeke, Jef D
2002 Sep;3(10):research0052-research0052 research0052, Genome biology
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A genetic screen for mutants defective in tDNA-mediated repression of RNA polymerase II transcription
Bachman, N; Boeke, JD
2001 AUG;18:S61-S61, Yeast
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Method for identifying suppressor mutations for common p53 cancer mutations
Boeke, Jef D.; Brachmann, Rainer K.
2001 Feb. 6,;1243(1):-, Official gazette of the United States Patent & Trademark Office. Patents
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Pmr1, manganese and Ty1 reverse transcription
Bolton, EC; Boeke, JD
2001 AUG;18:S46-S46, Yeast
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Aquaporins in Saccharomyces: Characterization of a second functional water channel protein
Carbrey, J M; Bonhivers, M; Boeke, J D; Agre, P
2001 Jan;98(3):1000-1005, Proceedings of the National Academy of Sciences of the United States of America
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Target DNA chromatinization modulates nicking by L1 endonuclease
Cost, G J; Golding, A; Schlissel, M S; Boeke, J D
2001 Jan;29(2):573-577, Nucleic acids research
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Frameshift signal transplantation and the unambiguous analysis of mutations in the yeast retrotransposon Ty1 Gag-Pol overlap region
Lawler, J F Jr; Merkulov, G V; Boeke, J D
2001 Aug;75(15):6769-6775, Journal of virology
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Pho23 is associated with the Rpd3 histone deacetylase and is required for its normal function in regulation of gene expression and silencing in Saccharomyces cerevisiae
Loewith, R; Smith, J S; Meijer, M; Williams, T J; Bachman, N; Boeke, J D; Young, D
2001 Jun;276(26):24068-24074, Journal of biological chemistry
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Pho23 is a component of the Rpd3 HDAC complex and is required for normal regulation of gene silencing in Saccharomyces cerevisiae
Loewith, R; Smith, JS; Meijer, M; Williams, TJ; Bachman, N; Boeke, JD; Young, D
2001 AUG;18:S91-S91, Yeast
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Ty1 proteolytic cleavage sites are required for transposition: all sites are not created equal
Merkulov, G V; Lawler, J F Jr; Eby, Y; Boeke, J D
2001 Jan;75(2):638-644, Journal of virology
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RNA lariat debranching enzyme
Ooi, S L; Dann, C 3rd; Nam, K; Leahy, D J; Damha, M J; Boeke, J D
2001 ;342:233-248, Methods in enzymology
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A DNA microarray-based genetic screen for nonhomologous end-joining mutants in Saccharomyces cerevisiae
Ooi, S L; Shoemaker, D D; Boeke, J D
2001 Dec;294(5551):2552-2556, Science
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A genome-wide screen for factors involved in non-homologous end joining
Ooi, SL; Shoemaker, DD; Boeke, JD
2001 AUG;18:S47-S47, Yeast
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Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions
Sauve, A A; Celic, I; Avalos, J; Deng, H; Boeke, J D; Schramm, V L
2001 Dec;40(51):15456-15463, Biochemistry
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Therapeutic effect of a Gag-nuclease fusion protein against retroviral infection in vivo
Schumann, G; Hermankova, M; Cannon, K; Mankowski, J L; Boeke, J D
2001 Aug;75(15):7030-7041, Journal of virology
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Transcription. Is S phase important for transcriptional silencing?
Smith, J S; Boeke, J D
2001 Jan;291(5504):608-609, Science
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Human L1 retrotransposition: cis preference versus trans complementation
Wei, W; Gilbert, N; Ooi, S L; Lawler, J F; Ostertag, E M; Kazazian, H H; Boeke, J D; Moran, J V
2001 Feb;21(4):1429-1439, Molecular & cellular biology
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A human nuclear shuttling protein that interacts with human immunodeficiency virus type 1 matrix is packaged into virions
Gupta, K; Ott, D; Hope, T J; Siliciano, R F; Boeke, J D
2000 Dec;74(24):11811-11824, Journal of virology
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Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants
Kim, J W; Kim, H C; Kim, G M; Yang, J M; Boeke, J D; Nam, K
2000 Sep;28(18):3666-3673, Nucleic acids research
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Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
Pickeral, O K; Makalowski, W; Boguski, M S; Boeke, J D
2000 Apr;10(4):411-415, Genome research
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A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family
Smith, J S; Brachmann, C B; Celic, I; Kenna, M A; Muhammad, S; Starai, V J; Avalos, J L; Escalante-Semerena, J C; Grubmeyer, C; Wolberger, C; Boeke, J D
2000 Jun;97(12):6658-6663, Proceedings of the National Academy of Sciences of the United States of America
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Retroshuffling the genomic deck
Boeke, J D; Pickeral, O K
1999 Mar;398(6723):108-9, 111, Nature
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Method for the inhibition and prevention of viral replication using fusions of a virus protein and a destructive enzyme
Boeke, Jef D.; Natsoulis, Georges
1999 Nov. 23,;1228(4):-, Official gazette of the United States Patent & Trademark Office. Patents
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In vitro transposition of article transposons
Devine, Scott E.; Boeke, Jef D.; Braiterman, Lelita T.
1999 Oct. 19,;1227(3):-, Official gazette of the United States Patent & Trademark Office. Patents
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Yeast - An experimental organism for all times
Fink, GR; Boeke, JD
1999 MAY;65(5):351-357, ASM news
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The Schizosaccharomyces pombe hst4(+) gene is a SIR2 homologue with silencing and centromeric functions
Freeman-Cook, L L; Sherman, J M; Brachmann, C B; Allshire, R C; Boeke, J D; Pillus, L
1999 Oct;10(10):3171-3186, Molecular biology of the cell
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The yeast retrotransposon Ty5 uses the anticodon stem-loop of the initiator methionine tRNA as a primer for reverse transcription
Ke, N; Gao, X; Keeney, J B; Boeke, J D; Voytas, D F
1999 Jul;5(7):929-938, RNA
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The conserved core of a human SIR2 homologue functions in yeast silencing
Sherman, J M; Stone, E M; Freeman-Cook, L L; Brachmann, C B; Boeke, J D; Pillus, L
1999 Sep;10(9):3045-3059, Molecular biology of the cell
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A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors
Smith, J S; Caputo, E; Boeke, J D
1999 Apr;19(4):3184-3197, Molecular & cellular biology
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Reverse two-hybrid system
Vidal, Marc; Boeke, Jef D.; Harlow, Ed
1999 Sep. 21,;1226(3):-, Official gazette of the United States Patent & Trademark Office. Patents
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Reverse two-hybrid systems
Vidal, Marc; Boeke, Jef D.; Harlow, Ed
1999 Oct. 12,;1227(2):-, Official gazette of the United States Patent & Trademark Office. Patents
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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
Winzeler, E A; Shoemaker, D D; Astromoff, A; Liang, H; Anderson, K; Andre, B; Bangham, R; Benito, R; Boeke, J D; Bussey, H; Chu, A M; Connelly, C; Davis, K; Dietrich, F; Dow, S W; El Bakkoury, M; Foury, F; Friend, S H; Gentalen, E; Giaever, G; Hegemann, J H; Jones, T; Laub, M; Liao, H; Liebundguth, N; Lockhart, D J; Lucau-Danila, A; Lussier, M; M'Rabet, N; Menard, P; Mittmann, M; Pai, C; Rebischung, C; Revuelta, J L; Riles, L; Roberts, C J; Ross-MacDonald, P; Scherens, B; Snyder, M; Sookhai-Mahadeo, S; Storms, R K; Veronneau, S; Voet, M; Volckaert, G; Ward, T R; Wysocki, R; Yen, G S; Yu, K; Zimmermann, K; Philippsen, P; Johnston, M; Davis, R W
1999 Aug;285(5429):901-906, Science
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Yeast retrotransposons: finding a nice quiet neighborhood
Boeke, J D; Devine, S E
1998 Jun;93(7):1087-1089, Cell
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Genetic assays and strains using human TP53
Boeke, J. D.; Brachmann, R. K.
1998 Nov. 3,;1216(1):555-555, Official gazette of the United States Patent & Trademark Office. Patents
— id: 617152, year: 1998, vol: 1216, page: 555, stat: Journal Article,

Nucleic acids encoding P53 mutations which suppress P53 cancer mutations
Boeke, J. D.; Brachmann, R. K.
1998 Nov. 24,;121(4):3973-3973, Official gazette of the United States Patent & Trademark Office. Patents
— id: 617142, year: 1998, vol: 121, page: 3973, stat: Journal Article,

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
Brachmann, C B; Davies, A; Cost, G J; Caputo, E; Li, J; Hieter, P; Boeke, J D
1998 Jan;14(2):115-132, Yeast
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Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations
Brachmann, R K; Yu, K; Eby, Y; Pavletich, N P; Boeke, J D
1998 Apr;17(7):1847-1859, EMBO journal
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Moloney murine leukemia virus protease expressed in bacteria is enzymatically active
Cannon, K; Qin, L; Schumann, G; Boeke, J D
1998 ;143(2):381-388, Archives of virology
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Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
Cost, G J; Boeke, J D
1998 Dec;37(51):18081-18093, Biochemistry
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A hotspot for the Drosophila gypsy retroelement in the ovo locus
Dej, K J; Gerasimova, T; Corces, V G; Boeke, J D
1998 Sep;26(17):4019-4025, Nucleic acids research
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Artificial transposons
Devine, S. E.; Boeke, J. D.; Braiterman, L. T.
1998 Dec. 1,;1217(1):492-492, Official gazette of the United States Patent & Trademark Office. Patents
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In vitro transposition of artificial transposons for DNA sequencing
Devine, S. E.; Boeke, J. D.; Braiterman, L. T.
1998 March 17,;1208(3):2320-2321, Official gazette of the United States Patent & Trademark Office. Patents
— id: 617162, year: 1998, vol: 1208, page: 2320, stat: Journal Article,

Retrotransposon R1Bm endonuclease cleaves the target sequence
Feng, Q; Schumann, G; Boeke, J D
1998 Mar;95(5):2083-2088, Proceedings of the National Academy of Sciences of the United States of America
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Schizosaccharomyces pombe retrotransposon Tf2 mobilizes primarily through homologous cDNA recombination
Hoff, E F; Levin, H L; Boeke, J D
1998 Nov;18(11):6839-6852, Molecular & cellular biology
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Invading the yeast nucleus: a nuclear localization signal at the C terminus of Ty1 integrase is required for transposition in vivo
Kenna, M A; Brachmann, C B; Devine, S E; Boeke, J D
1998 Feb;18(2):1115-1124, Molecular & cellular biology
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Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
Kim, J M; Vanguri, S; Boeke, J D; Gabriel, A; Voytas, D F
1998 May;8(5):464-478, Genome research
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Skipper, an LTR retrotransposon of Dictyostelium
Leng, P; Klatte, D H; Schumann, G; Boeke, J D; Steck, T L
1998 Apr;26(8):2008-2015, Nucleic acids research
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Libraries of green fluorescent protein fusions generated by transposition in vitro
Merkulov, G V; Boeke, J D
1998 Nov;222(2):213-222, Gene
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Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: intron length effects and activity of a precursor snoRNA
Ooi, S L; Samarsky, D A; Fournier, M J; Boeke, J D
1998 Sep;4(9):1096-1110, RNA
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Distribution of a limited Sir2 protein pool regulates the strength of yeast rDNA silencing and is modulated by Sir4p
Smith, J S; Brachmann, C B; Pillus, L; Boeke, J D
1998 Jul;149(3):1205-1219, Genetics
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Small open reading frames: beautiful needles in the haystack
Basrai, M A; Hieter, P; Boeke, J D
1997 Aug;7(8):768-771, Genome research
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LINEs and Alus--the polyA connection
Boeke, J D
1997 May;16(1):6-7, Nature genetics
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Mapping the multimerization domains of the Gag protein of yeast retrotransposon Ty1
Brachmann, C B; Boeke, J D
1997 Jan;71(1):812-817, Journal of virology
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Tag games in yeast: the two-hybrid system and beyond
Brachmann, R K; Boeke, J D
1997 Oct;8(5):561-568, Current opinion in biotechnology
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A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes
Devine, S E; Chissoe, S L; Eby, Y; Wilson, R K; Boeke, J D
1997 May;7(5):551-563, Genome research
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In vitro transposition of artificial transposons
Devine, S. E.; Boeke, J. D.; Braiterman, L. T.
1997 Oct. 14,;1203(2):1314-1314, Official gazette of the United States Patent & Trademark Office. Patents
— id: 617172, year: 1997, vol: 1203, page: 1314, stat: Journal Article,

A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes
Devine, SE; Chissoe, SL; Eby, Y; Wilson, RK; Boeke, JD
1997 MAY;7(5):551-563, PCR methods & applications
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Complementation of integrase function in HIV-1 virions
Fletcher, T M 3rd; Soares, M A; McPhearson, S; Hui, H; Wiskerchen, M; Muesing, M A; Shaw, G M; Leavitt, A D; Boeke, J D; Hahn, B H
1997 Aug;16(16):5123-5138, EMBO journal
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Plus-strand strong-stop DNA transfer in yeast Ty retrotransposons
Lauermann, V; Boeke, J D
1997 Nov;16(21):6603-6612, EMBO journal
— id: 616012, year: 1997, vol: 16, page: 6603, stat: Journal Article,

Increased length of long terminal repeats inhibits Ty1 transposition and leads to the formation of tandem multimers
Lauermann, V; Hermankova, M; Boeke, J D
1997 Apr;145(4):911-922, Genetics
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Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation
Nam, K; Lee, G; Trambley, J; Devine, S E; Boeke, J D
1997 Feb;17(2):809-818, Molecular & cellular biology
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Antiretroviral effect of a gag-RNase HI fusion gene
Schumann, G; Cannon, K; Ma, W P; Crouch, R J; Boeke, J D
1997 Jun;4(6):593-599, Gene therapy
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An unusual form of transcriptional silencing in yeast ribosomal DNA
Smith, J S; Boeke, J D
1997 Jan;11(2):241-254, Genes & development
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Infection of the germ line by retroviral particles produced in the follicle cells: a possible mechanism for the mobilization of the gypsy retroelement of Drosophila
Song, S U; Kurkulos, M; Boeke, J D; Corces, V G
1997 Jul;124(14):2789-2798, Development
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DNA repair. A little help for my ends
Boeke, J D
1996 Oct;383(6601):579-581, Nature
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Destroying retroviruses from within
Boeke, J D; Hahn, B
1996 Nov;4(11):421-426, Trends in microbiology
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Dominant-negative p53 mutations selected in yeast hit cancer hot spots
Brachmann, R K; Vidal, M; Boeke, J D
1996 Apr;93(9):4091-4095, Proceedings of the National Academy of Sciences of the United States of America
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A useful colony colour phenotype associated with the yeast selectable/counter-selectable marker MET15
Cost, G J; Boeke, J D
1996 Aug;12(10):939-941, Yeast
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Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III
Devine, S E; Boeke, J D
1996 Mar;10(5):620-633, Genes & development
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Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
Feng, Q; Moran, J V; Kazazian, H H Jr; Boeke, J D
1996 Nov;87(5):905-916, Cell
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Replication infidelity during a single cycle of Ty1 retrotransposition
Gabriel, A; Willems, M; Mules, E H; Boeke, J D
1996 Jul;93(15):7767-7771, Proceedings of the National Academy of Sciences of the United States of America
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Alternative tRNA primers for HIV
Lauermann, V; Peden, K; Boeke, J D
1996 Dec;10(14):1738-1740, AIDS
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A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein
Merkulov, G V; Swiderek, K M; Brachmann, C B; Boeke, J D
1996 Aug;70(8):5548-5556, Journal of virology
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High frequency retrotransposition in cultured mammalian cells
Moran, J V; Holmes, S E; Naas, T P; DeBerardinis, R J; Boeke, J D; Kazazian, H H Jr
1996 Nov;87(5):917-927, Cell
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Determination of L1 functional domains using a high-frequency retrotransposition assay in HeLa cells
Moran, J. V.; Holmes, S. E.; Naas, T. P.; Deberardinis, R. J.; Feng, O.; Boeke, J. D.; Kazazian, H. H.
1996 ;59(4 SUPPL.):A32-A32, American journal of human genetics
— id: 617182, year: 1996, vol: 59, page: A32, stat: Journal Article,

Therapeutic effect of Gag-nuclease fusion protein on retrovirus-infected cell cultures
Schumann, G; Qin, L; Rein, A; Natsoulis, G; Boeke, J D
1996 Jul;70(7):4329-4337, Journal of virology
— id: 616002, year: 1996, vol: 70, page: 4329, stat: Journal Article,

Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions
Vidal, M; Brachmann, R K; Fattaey, A; Harlow, E; Boeke, J D
1996 Sep;93(19):10315-10320, Proceedings of the National Academy of Sciences of the United States of America
— id: 616092, year: 1996, vol: 93, page: 10315, stat: Journal Article,

Genetic characterization of a mammalian protein-protein interaction domain by using a yeast reverse two-hybrid system
Vidal, M; Braun, P; Chen, E; Boeke, J D; Harlow, E
1996 Sep;93(19):10321-10326, Proceedings of the National Academy of Sciences of the United States of America
— id: 616482, year: 1996, vol: 93, page: 10321, stat: Journal Article,

The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability
Brachmann, C B; Sherman, J M; Devine, S E; Cameron, E E; Pillus, L; Boeke, J D
1995 Dec;9(23):2888-2902, Genes & development
— id: 615662, year: 1995, vol: 9, page: 2888, stat: Journal Article,

NOVEL APPROACHES TO THE SYNTHESIS AND ANALYSIS OF BRANCHED RNA
GANESHAN, K; TADEY, T; NAM, K; BRAICH, R; PURDY, WC; BOEKE, JD; DAMHA, MJ
1995 ;14(3-5):1009-1013, Nucleosides & nucleotides
— id: 617202, year: 1995, vol: 14, page: 1009, stat: Journal Article,

TARGETING FOREIGN PROTEINS TO HIV PARTICLES VIA FUSION WITH VPR AND VPX
KAPPES, JC; WU, XY; LIU, HM; XIAO, HL; KIM, J; SESHAIAH, P; BOEKE, JD; HAHN, BH
1995 MAR 10;:395-395, Journal of cellular biochemistry
— id: 617192, year: 1995, vol: , page: 395, stat: Journal Article,

Multiple molecular determinants for retrotransposition in a primer tRNA
Keeney, J B; Chapman, K B; Lauermann, V; Voytas, D F; Astrom, S U; von Pawel-Rammingen, U; Bystrom, A; Boeke, J D
1995 Jan;15(1):217-226, Molecular & cellular biology
— id: 615802, year: 1995, vol: 15, page: 217, stat: Journal Article,

Plus-strand strong-stop DNA synthesis in retrotransposon Ty1
Lauermann, V; Nam, K; Trambley, J; Boeke, J D
1995 Dec;69(12):7845-7850, Journal of virology
— id: 615442, year: 1995, vol: 69, page: 7845, stat: Journal Article,

Targeting of a nuclease to murine leukemia virus capsids inhibits viral multiplication
Natsoulis, G; Seshaiah, P; Federspiel, M J; Rein, A; Hughes, S H; Boeke, J D
1995 Jan;92(2):364-368, Proceedings of the National Academy of Sciences of the United States of America
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Targeting foreign proteins to human immunodeficiency virus particles via fusion with Vpr and Vpx
Wu, X; Liu, H; Xiao, H; Kim, J; Seshaiah, P; Natsoulis, G; Boeke, J D; Hahn, B H; Kappes, J C
1995 Jun;69(6):3389-3398, Journal of virology
— id: 616472, year: 1995, vol: 69, page: 3389, stat: Journal Article,

Proteins which interact with TYA, the structural protein of the yeast retrotransposon Ty1
Baker-Brachmann, Carrie L.; Boeke, Jef D.
1994 ;0(18B):14-14, Journal of cellular biochemistry. Supplement
— id: 616922, year: 1994, vol: 0, page: 14, stat: Journal Article,

In vitro integration of retrotransposon Ty1: a direct physical assay
Braiterman, L T; Boeke, J D
1994 Sep;14(9):5719-5730, Molecular & cellular biology
— id: 615652, year: 1994, vol: 14, page: 5719, stat: Journal Article,

Ty1 in vitro integration: effects of mutations in cis and in trans
Braiterman, L T; Boeke, J D
1994 Sep;14(9):5731-5740, Molecular & cellular biology
— id: 616462, year: 1994, vol: 14, page: 5731, stat: Journal Article,

In-frame linker insertion mutagenesis of yeast transposon Ty1: phenotypic analysis
Braiterman, L T; Monokian, G M; Eichinger, D J; Merbs, S L; Gabriel, A; Boeke, J D
1994 Feb;139(1):19-26, Gene
— id: 616212, year: 1994, vol: 139, page: 19, stat: Journal Article,

A direct physical assay for Ty1 integration: Effects of trans factors and cis sequences
Braiterman, Lelita T.; Boeke, Jef D.
1994 ;0(18B):15-15, Journal of cellular biochemistry. Supplement
— id: 616932, year: 1994, vol: 0, page: 15, stat: Journal Article,

Keystone Symposium on Transposition and Site-Specific Recombination: Mechanism and Biology, Park City, Utah, USA, January 21-28, 1994
Craig, Nancy; Boeke, Jef
1994 ;0(18B):2-46, Journal of cellular biochemistry. Supplement
— id: 616912, year: 1994, vol: 0, page: 2, stat: Journal Article,

Efficient integration of artificial transposons into plasmid targets in vitro: a useful tool for DNA mapping, sequencing and genetic analysis
Devine, S E; Boeke, J D
1994 Sep;22(18):3765-3772, Nucleic acids research
— id: 615722, year: 1994, vol: 22, page: 3765, stat: Journal Article,

SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae
Dollard, C; Ricupero-Hovasse, S L; Natsoulis, G; Boeke, J D; Winston, F
1994 Aug;14(8):5223-5228, Molecular & cellular biology
— id: 615412, year: 1994, vol: 14, page: 5223, stat: Journal Article,

An in vivo assay for the reverse transcriptase of human retrotransposon L1 in Saccharomyces cerevisiae
Dombroski, B A; Feng, Q; Mathias, S L; Sassaman, D M; Scott, A F; Kazazian, H H Jr; Boeke, J D
1994 Jul;14(7):4485-4492, Molecular & cellular biology
— id: 616332, year: 1994, vol: 14, page: 4485, stat: Journal Article,

An in vivo assay for L1 reverse transcriptase activity in yeast
Feng, Q.; Dombroski, B.; Mathias, S.; Scott, A.; Kazazian, H.; Boeke, J. D.
1994 ;0(18B):20-20, Journal of cellular biochemistry. Supplement
— id: 617222, year: 1994, vol: 0, page: 20, stat: Journal Article,

Analysis of retrotransposition in a heterologous system
Hoff, Eleanor F.; Levin, Henry L.; Boeke, Jef D.
1994 ;0(18B):26-26, Journal of cellular biochemistry. Supplement
— id: 616942, year: 1994, vol: 0, page: 26, stat: Journal Article,

The HIV vpx and vpr genes mediate virion incorporation of nuclease fusion proteins
Kappes, J. C.; Wu, X.; Liu, H.-M.; Boeke, J. D.; Natsoulis, C.; Hahn, B. H.
1994 ;0(18B):162-162, Journal of cellular biochemistry. Supplement
— id: 617232, year: 1994, vol: 0, page: 162, stat: Journal Article,

Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe
Keeney, J B; Boeke, J D
1994 Mar;136(3):849-856, Genetics
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Mutations in the tRNA-i-Met primer of Ty1 which abolish transposition
Keeney, Jill B.; Chapman, Karen; Bystrom, Anders; Boeke, Jef
1994 ;0(18B):27-27, Journal of cellular biochemistry. Supplement
— id: 616952, year: 1994, vol: 0, page: 27, stat: Journal Article,

The primer tRNA sequence is not inherited during Ty1 retrotransposition
Lauermann, V; Boeke, J D
1994 Oct;91(21):9847-9851, Proceedings of the National Academy of Sciences of the United States of America
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NOVEL GENE-EXPRESSION MECHANISM IN A FISSION YEAST RETROELEMENT - TF1 PROTEINS ARE DERIVED FROM A SINGLE PRIMARY TRANSLATION PRODUCT (VOL 12, PG 4885, 1993)
LEVIN, HL; WEAVER, DC; BOEKE, JD
1994 MAR 15;13(6):1494-1494, EMBO journal
— id: 617212, year: 1994, vol: 13, page: 1494, stat: Journal Article,

In-frame linker insertion mutagenesis of yeast transposon Ty1: mutations, transposition and dominance
Monokian, G M; Braiterman, L T; Boeke, J D
1994 Feb;139(1):9-18, Gene
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Yeast lariat debranching enzyme. Substrate and sequence specificity
Nam, K; Hudson, R H; Chapman, K B; Ganeshan, K; Damha, M J; Boeke, J D
1994 Aug;269(32):20613-20621, Journal of biological chemistry
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The SPT10 and SPT21 genes of Saccharomyces cerevisiae
Natsoulis, G; Winston, F; Boeke, J D
1994 Jan;136(1):93-105, Genetics
— id: 615972, year: 1994, vol: 136, page: 93, stat: Journal Article,

Mapping of DBR1 and YPK1 suggests a major revision of the genetic map of the left arm of Saccharomyces cerevisiae Chromosome XI
Simchen, G; Chapman, K B; Caputo, E; Nam, K; Riles, L; Levin, D E; Boeke, J D
1994 Oct;138(2):283-287, Genetics
— id: 615322, year: 1994, vol: 138, page: 283, stat: Journal Article,

An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus
Song, S U; Gerasimova, T; Kurkulos, M; Boeke, J D; Corces, V G
1994 Sep;8(17):2046-2057, Genes & development
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Alu sequences in RMSA-1 protein?
Tugendreich, S; Feng, Q; Kroll, J; Sears, D D; Boeke, J D; Hieter, P
1994 Jul;370(6485):106-106, Nature
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AN IN-VIVO ASSAY FOR L1 REVERSE-TRANSCRIPTASE ACTIVITY IN YEAST
DOMBROSKI, BA; MATHIAS, SL; SCOTT, AF; BOEKE, JD; KAZAZIAN, HH
1993 SEP;53(3):229-229, American journal of human genetics
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Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences
Ji, H; Moore, D P; Blomberg, M A; Braiterman, L T; Voytas, D F; Natsoulis, G; Boeke, J D
1993 Jun;73(5):1007-1018, Cell
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A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae
Kawakami, K; Pande, S; Faiola, B; Moore, D P; Boeke, J D; Farabaugh, P J; Strathern, J N; Nakamura, Y; Garfinkel, D J
1993 Oct;135(2):309-320, Genetics
— id: 616282, year: 1993, vol: 135, page: 309, stat: Journal Article,

Novel gene expression mechanism in a fission yeast retroelement: Tf1 proteins are derived from a single primary translation product
Levin, H L; Weaver, D C; Boeke, J D
1993 Dec;12(12):4885-4895, EMBO journal
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Yeast retrotransposons and tRNAs
Voytas, D F; Boeke, J D
1993 Dec;9(12):421-427, Trends in genetics
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Sequence analysis of closely related retrotransposon families from fission yeast
Weaver, D C; Shpakovski, G V; Caputo, E; Levin, H L; Boeke, J D
1993 Sep;131(1):135-139, Gene
— id: 616232, year: 1993, vol: 131, page: 135, stat: Journal Article,

YEAST RETROTRANSPOSON TYL TRANSPOSITION IN-VIVO AND IN-VITRO
BOEKE J D; BAKER C L; BRAITERMAN L B; CHAPMAN K B; GABRIEL A; JI H L; LAUERMANN V; MOORE D; NATSOULIS G; XU H
1992 ;61(2 PART 2):A139-A139, Biophysical journal
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YEAST RETROTRANSPOSON TY1 - TRANSPOSITION INVIVO AND INVITRO
BOEKE, JD; BAKER, CL; BRAITERMAN, LB; CHAPMAN, KB; GABRIEL, A; JI, HL; LAUERMANN, V; MOORE, D; NATSOULIS, G; XU, H
1992 JAN 1;6(1):A139-A139, FASEB journal
— id: 617262, year: 1992, vol: 6, page: A139, stat: Journal Article,

Initiator methionine tRNA is essential for Ty1 transposition in yeast
Chapman, K B; Bystrom, A S; Boeke, J D
1992 Apr;89(8):3236-3240, Proceedings of the National Academy of Sciences of the United States of America
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SDH1, the gene encoding the succinate dehydrogenase flavoprotein subunit from Saccharomyces cerevisiae
Chapman, K B; Solomon, S D; Boeke, J D
1992 Sep;118(1):131-136, Gene
— id: 616352, year: 1992, vol: 118, page: 131, stat: Journal Article,

HEMOPHILIA A AND A HUMAN TRANSPOSABLE ELEMENT
KAZAZIAN H H JR; DOMBROSKI B A; HIGUCHI M; SCOTT A F; MATHIAS S; GABRIEL A; BOEKE J D; ANTONARAKIS S E
1992 ;(16 PART F):2-2, Journal of cellular biochemistry. Supplement
— id: 617282, year: 1992, vol: , page: 2, stat: Journal Article,

Demonstration of retrotransposition of the Tf1 element in fission yeast
Levin, H L; Boeke, J D
1992 Mar;11(3):1145-1153, EMBO journal
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Yeast retrotransposon revealed
Voytas, D F; Boeke, J D
1992 Aug;358(6389):717-717, Nature
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GENETIC SCREENS AND SELECTION FOR CELL AND NUCLEAR FUSION MUTANTS
BERLIN V; BRILL J A; TRUEHEART J; BOEKE J D; FINK G R
1991 ;:774-792, Methods in enzymology
— id: 617312, year: 1991, vol: , page: 774, stat: Journal Article,

Genetic screens and selections for cell and nuclear fusion mutants
Berlin, V; Brill, J A; Trueheart, J; Boeke, J D; Fink, G R
1991 ;194:774-792, Methods in enzymology
— id: 616362, year: 1991, vol: 194, page: 774, stat: Journal Article,

TRANSPOSITION IN YEAST MECHANISM AND HOST FACTORS
BOEKE J D; BRAITERMAN L; CHAPMAN K; EICHINGER D; XU H
1991 ;(15 PART D):47-47, Journal of cellular biochemistry. Supplement
— id: 617322, year: 1991, vol: , page: 47, stat: Journal Article,

Retrotransposition mechanisms
Boeke, J D; Chapman, K B
1991 Jun;3(3):502-507, Current opinion in cell biology
— id: 616522, year: 1991, vol: 3, page: 502, stat: Journal Article,

Doubling Ty1 element copy number in Saccharomyces cerevisiae: host genome stability and phenotypic effects
Boeke, J D; Eichinger, D J; Natsoulis, G
1991 Dec;129(4):1043-1052, Genetics
— id: 615962, year: 1991, vol: 129, page: 1043, stat: Journal Article,

Yeast transposable elements
Boeke, JD; Sandmeyer, SB
The Molecular and cellular biology of the yeast Saccharomyces. Vol. 1. Genome dynamics, protein synthesis, and energetics Cold Spring Harbor, N.Y. : Cole Spring Harbor Laboratory Press, c1991,
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ISOLATION OF A MUTANT DEFECTIVE IN TY1 TRANSPOSITION AND INTRON DEBRANCHING IN SACCHAROMYCES-CEREVISIAE
CHAPMAN K B; BOEKE J D
1991 ;(15 PART D):61-61, Journal of cellular biochemistry. Supplement
— id: 617332, year: 1991, vol: , page: 61, stat: Journal Article,

Isolation and characterization of the gene encoding yeast debranching enzyme
Chapman, K B; Boeke, J D
1991 May;65(3):483-492, Cell
— id: 615702, year: 1991, vol: 65, page: 483, stat: Journal Article,

Reverse transcriptase encoded by a retrotransposon from the trypanosomatid Crithidia fasciculata
Gabriel, A; Boeke, J D
1991 Nov;88(21):9794-9798, Proceedings of the National Academy of Sciences of the United States of America
— id: 615282, year: 1991, vol: 88, page: 9794, stat: Journal Article,

Reverse transcriptase encoded by a human transposable element
Mathias, S L; Scott, A F; Kazazian, H H Jr; Boeke, J D; Gabriel, A
1991 Dec;254(5039):1808-1810, Science
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New antiviral strategy using capsid-nuclease fusion proteins
Natsoulis, G; Boeke, J D
1991 Aug;352(6336):632-635, Nature
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The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci
Natsoulis, G; Dollard, C; Winston, F; Boeke, J D
1991 Dec;3(12):1249-1259, New biologist
— id: 615842, year: 1991, vol: 3, page: 1249, stat: Journal Article,

IN-VITRO MUTAGENESIS AND PLASMID SHUFFLING FROM CLONED GENE TO MUTANT YEAST
SIKORSKI R S; BOEKE J D
1991 ;:302-318, Methods in enzymology
— id: 617302, year: 1991, vol: , page: 302, stat: Journal Article,

In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast
Sikorski, R S; Boeke, J D
1991 ;194:302-318, Methods in enzymology
— id: 615852, year: 1991, vol: 194, page: 302, stat: Journal Article,

Inhibition of Ty1 transposition by mating pheromones in Saccharomyces cerevisiae
Xu, H; Boeke, J D
1991 May;11(5):2736-2743, Molecular & cellular biology
— id: 615302, year: 1991, vol: 11, page: 2736, stat: Journal Article,

Reverse transcriptase, the end of the chromosome, and the end of life
Boeke, J D
1990 Apr;61(2):193-195, Cell
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Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae
Curcio, M J; Hedge, A M; Boeke, J D; Garfinkel, D J
1990 Jan;220(2):213-221, Molecular & general genetics
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A specific terminal structure is required for Ty1 transposition
Eichinger, D J; Boeke, J D
1990 Mar;4(3):324-330, Genes & development
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OPTICAL FIBERS AS TETRAD DISSECTION NEEDLES
EICHINGER, DJ; BOEKE, JD
1990 MAR-APR;6(2):139-139, Yeast
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A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculata
Gabriel, A; Yen, T J; Schwartz, D C; Smith, C L; Boeke, J D; Sollner-Webb, B; Cleveland, D W
1990 Feb;10(2):615-624, Molecular & cellular biology
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The absence of adenine methylation increases the ligation efficiency of partially filled staggered DNA ends
Levin, H L; Boeke, J D
1990 Oct;18(20):6146-6146, Nucleic acids research
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Two related families of retrotransposons from Schizosaccharomyces pombe
Levin, H L; Weaver, D C; Boeke, J D
1990 Dec;10(12):6791-6798, Molecular & cellular biology
— id: 615782, year: 1990, vol: 10, page: 6791, stat: Journal Article,

THE PRODUCTS OF THE SPT-10 AND SPT-21 GENES OF SACCHAROMYCES-CEREVISIAE ACTIVATE AND REPRESS TRANSCRIPTION AT A LARGE NUMBER OF UNLINKED LOCI
NATSOULIS G; BOEKE J D
1990 ;6(SPEC. ISSUE):S299-S299, Yeast
— id: 617362, year: 1990, vol: 6, page: S299, stat: Journal Article,

Trans-kingdom promiscuity
Sikorski, R S; Michaud, W; Levin, H L; Boeke, J D; Hieter, P
1990 Jun;345(6276):581-582, Nature
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Host genes that influence transposition in yeast: the abundance of a rare tRNA regulates Ty1 transposition frequency
Xu, H; Boeke, J D
1990 Nov;87(21):8360-8364, Proceedings of the National Academy of Sciences of the United States of America
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Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: analysis of mini-Ty1 elements
Xu, H; Boeke, J D
1990 Jun;10(6):2695-2702, Molecular & cellular biology
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TRANSCRIPTION AND REVERSE TRANSCRIPTION OF RETROTRANSPOSONS
BOEKE J D; CORCES V G
1989 ;:403-434, Annual review of microbiology
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Transcription and reverse transcription of retrotransposons
Boeke, J D; Corces, V G
1989 ;43:403-434, Annual review of microbiology
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Ty1 transposition in Saccharomyces cerevisiae is nonrandom
Natsoulis, G; Thomas, W; Roghmann, M C; Winston, F; Boeke, J D
1989 Oct;123(2):269-279, Genetics
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REGULATION OF YEAST TY ELEMENT TRANSPOSITION
BOEKE J D; EICHINGER D; FINK G R
1988 ;:169-180, Banbury report
— id: 617382, year: 1988, vol: , page: 169, stat: Journal Article,

The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1
Boeke, J D; Eichinger, D; Castrillon, D; Fink, G R
1988 Apr;8(4):1432-1442, Molecular & cellular biology
— id: 615902, year: 1988, vol: 8, page: 1432, stat: Journal Article,

A general method for the chromosomal amplification of genes in yeast
Boeke, J D; Xu, H; Fink, G R
1988 Jan;239(4837):280-282, Science
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The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition
Eichinger, D J; Boeke, J D
1988 Sep;54(7):955-966, Cell
— id: 615582, year: 1988, vol: 54, page: 955, stat: Journal Article,

Retrovirus-like vectors for Saccharomyces cerevisiae: integration of foreign genes controlled by efficient promoters into yeast chromosomal DNA
Jacobs, E; Dewerchin, M; Boeke, J D
1988 Jul;67(2):259-269, Gene
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Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition
Youngren, S D; Boeke, J D; Sanders, N J; Garfinkel, D J
1988 Apr;8(4):1421-1431, Molecular & cellular biology
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5 FLUOROOROTIC ACID AS A SELECTIVE AGENT IN YEAST MOLECULAR GENETICS
BOEKE J D; TRUEHART J; NATSOULIS G; FINK G R
1987 ;:164-175, Methods in enzymology
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5-Fluoroorotic acid as a selective agent in yeast molecular genetics
Boeke, J D; Trueheart, J; Natsoulis, G; Fink, G R
1987 ;154:164-175, Methods in enzymology
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Two genes required for cell fusion during yeast conjugation: evidence for a pheromone-induced surface protein
Trueheart, J; Boeke, J D; Fink, G R
1987 Jul;7(7):2316-2328, Molecular & cellular biology
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High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae
Xu, H; Boeke, J D
1987 Dec;84(23):8553-8557, Proceedings of the National Academy of Sciences of the United States of America
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Saccharomyces cerevisiae SPT3 gene is required for transposition and transpositional recombination of chromosomal Ty elements
Boeke, J D; Styles, C A; Fink, G R
1986 Nov;6(11):3575-3581, Molecular & cellular biology
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TY ELEMENT TRANSPOSITION IN YEAST - FUNCTIONAL AND NONFUNCTIONAL ELEMENTS
BOEKE, JD; CASTRILLON, DH; GARFINKEL, DJ; FINK, GR
1986 ;:138-138, Journal of cellular biochemistry
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TRANSPOSITION OF TY ELEMENTS IN YEAST
BOEKE, JD; GARFINKEL, DJ; STYLES, CA; FINK, GR
1986 FEB;5(1):69-69, DNA
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THE MECHANISM AND CONSEQUENCES OF RETROTRANSPOSITION
FINK, GR; BOEKE, JD; GARFINKEL, DJ
1986 MAY;2(5):118-123, Trends in genetics
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METHOD FOR FACILITATING EXTERNALIZATION OF PROTEINS SYNTHESIZED IN BACTERIA US PATENT-4595658. JUNE 17 1986
ZINDER N D; MODEL P; BOEKE J D
1986 ;1067(3):1250-1250, Official gazette of the United States Patent & Trademark Office. Patents
— id: 617432, year: 1986, vol: 1067, page: 1250, stat: Journal Article,

Ty elements transpose through an RNA intermediate
Boeke, J D; Garfinkel, D J; Styles, C A; Fink, G R
1985 Mar;40(3):491-500, Cell
— id: 616162, year: 1985, vol: 40, page: 491, stat: Journal Article,

Fine structure of a membrane anchor domain
Davis, N G; Boeke, J D; Model, P
1985 Jan;181(1):111-121, Journal of molecular biology
— id: 616392, year: 1985, vol: 181, page: 111, stat: Journal Article,

Ty element transposition: reverse transcriptase and virus-like particles
Garfinkel, D J; Boeke, J D; Fink, G R
1985 Sep;42(2):507-517, Cell
— id: 616342, year: 1985, vol: 42, page: 507, stat: Journal Article,

A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
Boeke, J D; LaCroute, F; Fink, G R
1984 ;197(2):345-346, Molecular & general genetics
— id: 616432, year: 1984, vol: 197, page: 345, stat: Journal Article,

Genetic transformation of Streptococcus pneumoniae by DNA cloned into the single-stranded bacteriophage f1
Barany, F; Boeke, J D
1983 Jan;153(1):200-210, Journal of bacteriology
— id: 615552, year: 1983, vol: 153, page: 200, stat: Journal Article,

ANALYSIS OF A MEMBRANE ANCHOR SEQUENCE IN A BACTERIO PHAGE F-1 PROTEIN
BOEKE J D; DAVIS N; MODEL P
1983 ;(7 PART B):347-347, Journal of cellular biochemistry. Supplement
— id: 617442, year: 1983, vol: , page: 347, stat: Journal Article,

In vitro translation and characterization of a unique histidine-rich protein mRNA in the avian malaria parasite Plasmodium lophurae
Wallach, M; Boeke, J D
1983 Apr;80(7):1867-1871, Proceedings of the National Academy of Sciences of the United States of America
— id: 616552, year: 1983, vol: 80, page: 1867, stat: Journal Article,

PLASMID EXCHANGE BETWEEN STREPTOCOCCUS-PNEUMONIAE AND ESCHERICHIA-COLI
BARANY F; BOEKE J D
1982 ;1982:P27-42, Genetic & cellular technology
— id: 617452, year: 1982, vol: 1982, page: P27, stat: Journal Article,

Staphylococcal plasmids that replicate and express erythromycin resistance in both Streptococcus pneumoniae and Escherichia coli
Barany, F; Boeke, J D; Tomasz, A
1982 May;79(9):2991-2995, Proceedings of the National Academy of Sciences of the United States of America
— id: 615182, year: 1982, vol: 79, page: 2991, stat: Journal Article,

A prokaryotic membrane anchor sequence: carboxyl terminus of bacteriophage f1 gene III protein retains it in the membrane
Boeke, J D; Model, P
1982 Sep;79(17):5200-5204, Proceedings of the National Academy of Sciences of the United States of America
— id: 616372, year: 1982, vol: 79, page: 5200, stat: Journal Article,

Effects of bacteriophage f1 gene III protein on the host cell membrane
Boeke, J D; Model, P; Zinder, N D
1982 ;186(2):185-192, Molecular & general genetics
— id: 616382, year: 1982, vol: 186, page: 185, stat: Journal Article,

The filamentous phage (Ff) as vectors for recombinant DNA--a review
Zinder, N D; Boeke, J D
1982 Jul-Aug;19(1):1-10, Gene
— id: 615342, year: 1982, vol: 19, page: 1, stat: Journal Article,

One and two codon insertion mutants of bacteriophage f1
Boeke, J D
1981 ;181(3):288-291, Molecular & general genetics
— id: 616442, year: 1981, vol: 181, page: 288, stat: Journal Article,

FILAMENTOUS PHAGE ASSEMBLY MEMBRANE INSERTION OF THE MAJOR COAT PROTEIN
MODEL P; RUSSEL M; BOEKE J D
1981 ;:P389-400, Progress in clinical & biological research
— id: 617462, year: 1981, vol: , page: P389, stat: Journal Article,

Filamentous phage assembly: membrane insertion of the major coat protein
Model, P; Russel, M; Boeke, J D
1981 ;64:389-400, Progress in clinical & biological research
— id: 616142, year: 1981, vol: 64, page: 389, stat: Journal Article,

Processing of filamentous phage pre-coat protein. Effect of sequence variations near the signal peptidase cleavage site
Boeke, J D; Russel, M; Model, P
1980 Dec;144(2):103-116, Journal of molecular biology
— id: 616412, year: 1980, vol: 144, page: 103, stat: Journal Article,

Restructuring the bacteriophage f1 genome: expression of gene VIII in the intergenic space
Moses, P B; Boeke, J D; Horiuchi, K; Zinder, N D
1980 Jul;104(2):267-278, Virology
— id: 616112, year: 1980, vol: 104, page: 267, stat: Journal Article,

Molecular basis of the am8H1 lesion in bacteriophage M13
Boeke, J D; Model, P
1979 Jul;96(1):299-301, Virology
— id: 616402, year: 1979, vol: 96, page: 299, stat: Journal Article,

Insertion mutant of bacteriophage f1 sensitive to EcoRI
Boeke, J D; Vovis, G F; Zinder, N D
1979 Jun;76(6):2699-2702, Proceedings of the National Academy of Sciences of the United States of America
— id: 616102, year: 1979, vol: 76, page: 2699, stat: Journal Article,