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Marcin Imielinski

Marcin Imielinski, MD, PhD

Perlmutter Cancer Center

Associate Professor, Department of Pathology

Keywords
genomics, cancer biology, structural variation, molecular pathology

Lab Website
mskilab.org
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Positions

Associate Professor, Department of Pathology at NYU Grossman School of Medicine

Director Cancer Genomics Research Program

Graduate Education

MD from University of Pennsylvania

PhD from University of Pennsylvania

Most large structural variants in cancer genomes can be detected without long reads

Choo, Zi-Ning; Behr, Julie M; Deshpande, Aditya; Hadi, Kevin; Yao, Xiaotong; Tian, Huasong; Takai, Kaori; Zakusilo, George; Rosiene, Joel; Da Cruz Paula, Arnaud; Weigelt, Britta; Setton, Jeremy; Riaz, Nadeem; Powell, Simon N; Busam, Klaus; Shoushtari, Alexander N; Ariyan, Charlotte; Reis-Filho, Jorge; de Lange, Titia; Imieliński, Marcin

Nature genetics. 2023 Dec; 55(12):2139-2148

Faster detection of somatic structural variants

Choo, Zi-Ning; Imieliński, Marcin

Nature biomedical engineering. 2023 Jul; 7(7):847-848

Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers

Setton, Jeremy; Hadi, Kevin; Choo, Zi-Ning; Kuchin, Katherine S; Tian, Huasong; Da Cruz Paula, Arnaud; Rosiene, Joel; Selenica, Pier; Behr, Julie; Yao, Xiaotong; Deshpande, Aditya; Sigouros, Michael; Manohar, Jyothi; Nauseef, Jones T; Mosquera, Juan-Miguel; Elemento, Olivier; Weigelt, Britta; Riaz, Nadeem; Reis-Filho, Jorge S; Powell, Simon N; Imieliński, Marcin

Nature. 2023 Sep; 621(7977):129-137

Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing

Deshpande, Aditya S; Ulahannan, Netha; Pendleton, Matthew; Dai, Xiaoguang; Ly, Lynn; Behr, Julie M; Schwenk, Stefan; Liao, Will; Augello, Michael A; Tyer, Carly; Rughani, Priyesh; Kudman, Sarah; Tian, Huasong; Otis, Hannah G; Adney, Emily; Wilkes, David; Mosquera, Juan Miguel; Barbieri, Christopher E; Melnick, Ari; Stoddart, David; Turner, Daniel J; Juul, Sissel; Harrington, Eoghan; Imieliński, Marcin

Nature biotechnology. 2022 Oct; 40(10):1488-1499

Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression

Paulson, Thomas G; Galipeau, Patricia C; Oman, Kenji M; Sanchez, Carissa A; Kuhner, Mary K; Smith, Lucian P; Hadi, Kevin; Shah, Minita; Arora, Kanika; Shelton, Jennifer; Johnson, Molly; Corvelo, Andre; Maley, Carlo C; Yao, Xiaotong; Sanghvi, Rashesh; Venturini, Elisa; Emde, Anne-Katrin; Hubert, Benjamin; Imielinski, Marcin; Robine, Nicolas; Reid, Brian J; Li, Xiaohong

Nature communications. 2022 04 28; 13(1):2300

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S; Silva, Tiago Chedraoui; Wong, Christopher K; Choi, Hyo Young; Felau, Ina; Robertson, A Gordon; Castro, Mauro A A; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L; Zhang, Hailei; June-Koo Lee, Jake; Berger, Ashton; Gao, Galen F; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H; Collisson, Eric A; Zody, Michael C; Ding, Li; Cherniack, Andrew D; Getz, Gad; Elemento, Olivier; Benz, Christopher C; Stuart, Josh; Zenklusen, J C; Beroukhim, Rameen; Chang, Jason C; Campbell, Joshua D; Hayes, D Neil; Yang, Lixing; Laird, Peter W; Weinstein, John N; Kwiatkowski, David J; Tsao, Ming S; Travis, William D; Khurana, Ekta; Berman, Benjamin P; Hoadley, Katherine A; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin

Cell reports. 2021 Feb 23; 34(8):108784

Structural variant evolution after telomere crisis

Dewhurst, Sally M; Yao, Xiaotong; Rosiene, Joel; Tian, Huasong; Behr, Julie; Bosco, Nazario; Takai, Kaori K; de Lange, Titia; Imieliński, Marcin

Nature communications. 2021 04 07; 12(1):2093

Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

Hadi, Kevin; Yao, Xiaotong; Behr, Julie M; Deshpande, Aditya; Xanthopoulakis, Charalampos; Tian, Huasong; Kudman, Sarah; Rosiene, Joel; Darmofal, Madison; DeRose, Joseph; Mortensen, Rick; Adney, Emily M; Shaiber, Alon; Gajic, Zoran; Sigouros, Michael; Eng, Kenneth; Wala, Jeremiah A; Wrzeszczyński, Kazimierz O; Arora, Kanika; Shah, Minita; Emde, Anne-Katrin; Felice, Vanessa; Frank, Mayu O; Darnell, Robert B; Ghandi, Mahmoud; Huang, Franklin; Dewhurst, Sally; Maciejowski, John; de Lange, Titia; Setton, Jeremy; Riaz, Nadeem; Reis-Filho, Jorge S; Powell, Simon; Knowles, David A; Reznik, Ed; Mishra, Bud; Beroukhim, Rameen; Zody, Michael C; Robine, Nicolas; Oman, Kenji M; Sanchez, Carissa A; Kuhner, Mary K; Smith, Lucian P; Galipeau, Patricia C; Paulson, Thomas G; Reid, Brian J; Li, Xiaohong; Wilkes, David; Sboner, Andrea; Mosquera, Juan Miguel; Elemento, Olivier; Imielinski, Marcin

Cell. 2020 Oct 01; 183(1):197-210.e32

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