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Pairwise and Multiple Alignment

Multiple Alignment Figure


A. Pairwise alignment

B. Introduction to Multiple Alignment

C. PILEUP

D. Step-by-step Instructions for PILEUP

E. Using CLUSTAL on the Alpha

F. Editing Multiple Alignments

G. Formatting Multiple Alignments

H. GCG Graphics

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Using Computers for Molecular Biology
Stuart M. Brown, Ph.D., RCR, NYU Medical Center
Comments to: browns02@mcrcr.med.nyu.edu