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Complete Online Bioinformatics Courses/Tutorials

Using Computers in Molecular Biology (Grad level molecular biology)
Stuart M. Brown, NYU School of Medicine, New York
http://www.med.nyu.edu/rcr/rcr/course/index.html

Bioinformatics Web practical - Protein Sequence Analysis: A practical guide
Terri Attwood & Alex Michie
Companion to the book "Protein Sequence Analysis: A practical guide"
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/jj/prefacefrm.html

Computational Analysis and Annotation of Sequence Data
A chapter in a book by CSHL Press: GENOME ANALYSIS: A LABORATORY MANUAL
Andreas Baxevani, Mark Boguski, and Francis Ouellette
http://www.cshl.org/books/g_a/bk1ch7/index.html

Bioinformatics: Genes, Proteins & Computers (grad, advanced undergrad biology)
Christine Anne Orengo, Terri Attwood, John Sgouros,
University College London, England
http://www.biochem.ucl.ac.uk/bsm/c40_ucl/
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/c32/index.html

Elementary Sequence Analysis
Brian Golding and Dick Morton
Department of Biology, McMaster University
Hamilton, Ontario, Canada
http://helix.biology.mcmaster.ca/721/welcome.html

A Guide to Molecular Sequence Analysis
Andrew Louka
EMBnet, University of Oslo
A fairly detailed beginners level tutorial on DNA and protein sequence analysis (BLAST, FASTA, intro to major public databases).
http://www.brunel.ac.uk/depts/bl/project/biocomp/sequence/seqanal_guide/contents.html

Bioinformatics: Computer Methods in Molecular Biology
The International Centre for Genetic Engineering and Biotechnology
Trieste, Italy
http://www.icgeb.trieste.it/net/courses/bioinfo98.html

BioComputing Hypertext Coursebook
Virtual School of Natural Sciences BioComputing Division
http://merlin.mbcr.bcm.tmc.edu:8001/bcd/Curric/welcome.html

Sequence Analysis with Distributed Resources
Christian Buschking & Chris Schleiermacher, Univ. of Bielefeld, Germany
http://bibiserv.techfak.uni-bielefeld.de/sadr/
http://www.ibc.wustl.edu/~zuker/Bio-5495/Bielefeld/ US mirror at Wash U. St.Louis)

EMBnet Biocomputing Tutorials
including: Internet for Biologists, CRI-MAP (linkage analysis), and DNA Sequence Analysis
http://area.ba.cnr.it/Embnetut/Universl/

Bioinformatics and Genomic Analysis
David Mount and Samuel Ward, The Univ. of Arizona, Tucson, AZ
http://www.blc.arizona.edu/courses/wardbioinf/default.html

Computational Biology
Robert F. Murphy, Carnegie Mellon University, Pittsburgh, PA
http://www.bio.cmu.edu/Courses/03510/

Algorithms in Molecular Biology
Richard Karp and Larry Ruzzo
Dept. of Computer Science & Engineering
Univ. of Washington, Seattle, WA
http://www.cs.washington.edu/education/courses/590bi/98w/

Genomics & Bioinformatics
Doug Brutlag, Stanford University
http://cmgm.stanford.edu/biochem118/bionformatics-lectures.html
Slides (PDF) and Streaming Video (Microsoft Media Player)

Computational Molecular Biology
Douglas L. Brutlag, Lee Kozar, Russ Altman
Stanford University
http://cmgm.stanford.edu/biochem218/ Syllabus
http://online.stanford.edu/courses/mis231/mis231.html Streaming Video (Microsoft Media Player)

Bioinformatics & Computational Genomics
Doron Lancet, Gustavo Glusman, Michael Rebhan
Weizmann Institute of Science, Israel
http://bioinformatics.weizmann.ac.il/courses/BCG/

Computer Analysis of Genome Information
Michael Gribskov and Doug Smith
San Diego Supercomputer Center
University of California, San Diego
http://www.sdsc.edu/~gribskov/bimm140/bimm140_lectures.html

Computational Molecular Biology
Sean Eddy, Warren Gish, David States, Michael Zuker
Washington University, St. Louis, MO
http://www.genetics.wustl.edu/bio5495/
http://www.ibc.wustl.edu/~zuker/Bio-5495/
http://www.ibc.wustl.edu/CMB/bio5495/syllabus.html

Bioinformatics
Mark Gerstein, Yale University, New Haven, CT
http://bioinfo.mbb.yale.edu/mbb447-99/lectures.htm

Bioinformatics Lecture '99
Boris Steipe, Genzentrum, Universität, München, Germany
http://www.lmb.uni-muenchen.de/Groups/Bioinformatics/bioinfo.html