Comparative proteomic analysis of the ATP-sensitive K(+) channel complex in different tissue types
Kefaloyianni, Eirini; Lyssand, John S; Moreno, Cesar; Delaroche, Diane; Hong, Miyoun; Fenyo, David; Mobbs, Charles V; Neubert, Thomas A; Coetzee, William A
2013 Jan;13(2):368-378, Proteomics
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Development of a Biosensor for Detection of Pleural Mesothelioma Cancer Biomarker Using Surface Imprinting
Mathur, A; Blais, S; Goparaju, C M V; Neubert, T; Pass, H; Levon, K
2013 13 Mar 2013;8(3):- e57681, PLoS ONE
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The molecular basis for selective inhibition of unconventional mRNA splicing by an IRE1-binding small molecule
Cross, Benedict C S; Bond, Peter J; Sadowski, Pawel G; Jha, Babal Kant; Zak, Jaroslav; Goodman, Jonathan M; Silverman, Robert H; Neubert, Thomas A; Baxendale, Ian R; Ron, David; Harding, Heather P
2012 Apr;109(15):E869-E878, Proceedings of the National Academy of Sciences of the United States of America
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Calpastatin modulates APP processing in the brains of beta-amyloid depositing but not wild-type mice
Morales-Corraliza, Jose; Berger, Jason D; Mazzella, Matthew J; Neubert, Thomas A; Ghiso, Jorge; Rao, Mala V; Staufenbiel, Matthias; Nixon, Ralph A; Mathews, Paul M
2012 Jun;33(6):1125.e9-1125.18, Neurobiology of aging
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Calpastatin modulates APP processing in the brains of beta -amyloid depositing but not wild-type mice
Morales-Corraliza, Jose; Berger, Jason D; Mazzella, Matthew J; Veeranna; Neubert, Thomas A; Ghiso, Jorge; Rao, Mala V; Staufenbiel, Matthias; Nixon, Ralph A; Mathews, Paul M
2012 ;33(6):e9-e18, Neurobiology of aging
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Conformational heterogeneity in V1/V2 domain affects the immunological properties of this region
Pinter, A.; Wu, A. Z.; Neubert, T.; Burkhart, M. D.; Honnen, W. J.
2012 SEP 13;9 2 2:-, Retrovirology
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Comparison of cardiolipins from Drosophila strains with mutations in putative remodeling enzymes
Schlame, Michael; Blais, Steven; Edelman-Novemsky, Irit; Xu, Yang; Montecillo, Fleurise; Phoon, Colin K L; Ren, Mindong; Neubert, Thomas A
2012 Jul;165(5):512-519, Chemistry & physics of lipids
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MIRG Survey 2011: Snapshot of Rapidly Evolving Label-Free Technologies Used for Characterizing Molecular Interactions
Yadav, Satya P; Bergqvist, Simon; Doyle, Michael L; Neubert, Thomas A; Yamniuk, Aaron P
2012 Sep;23(3):94-100, Journal of biomolecular techniques
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RNA binding proteins accumulate at the postsynaptic density with synaptic activity
Zhang, Guoan; Neubert, Thomas A; Jordan, Bryen A
2012 Jan 11;32(2):599-609, Journal of neuroscience
— id: 149813, year: 2012, vol: 32, page: 599, stat: Journal Article,

MAL facilitates the incorporation of exocytic uroplakin-delivering vesicles into the apical membrane of urothelial umbrella cells
Zhou, G; Liang, FX; Romih, R; Wang, Z; Liao, Y; Ghiso, J; Luque-Garcia, JL; Neubert, TA; Kreibich, G; Alonso, MA; Schaeren-Wiemers, N; Sun, TT
2012 Apr;23(7):1354-1366, Molecular biology of the cell
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Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry
Darie, Costel C; Deinhardt, Katrin; Zhang, Guoan; Cardasis, Helene S; Chao, Moses V; Neubert, Thomas A
2011 Dec;11(23):4514-4528, Proteomics
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Neuronal growth cone retraction relies on proneurotrophin receptor signaling through rac
Deinhardt, Katrin; Kim, Taeho; Spellman, Daniel S; Mains, Richard E; Eipper, Betty A; Neubert, Thomas A; Chao, Moses V; Hempstead, Barbara L
2011 ;4(202):ra82-ra82, Science signaling
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Cardiac ATP-sensitive K+ channel associates with the glycolytic enzyme complex
Hong, Miyoun; Kefaloyianni, Eirini; Bao, Li; Malester, Brian; Delaroche, Diane; Neubert, Thomas A; Coetzee, William A
2011 Jul;25(7):2456-2467, FASEB journal
— id: 134908, year: 2011, vol: 25, page: 2456, stat: Journal Article,

iPRG 2011: A study on the identification of electron transfer dissociation (ETD) mass spectra
Martens, L; Askenazi, M; Bandeira, N; Chalkley, R J; Clauser, K R; Deutsch, E; Lam, H H N; McDonald, W H; Neubert, T; Rudnick, P A
2011 October 2011;22:S20-S20, Journal of biomolecular techniques
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Catabolism of Alzheimer's amyloid-b: Implications for brain clearance and plaque deposition
McIntee F.L.; Giannoni P.; Blais S.; Neubert T.; Mathews P.; Rostagno A.; Ghiso J.
2011 ;8:?-?, Neuro-degenerative diseases
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The pseudokinase domain of JAK2 is a dual-specificity protein kinase that negatively regulates cytokine signaling
Ungureanu, Daniela; Wu, Jinhua; Pekkala, Tuija; Niranjan, Yashavanthi; Young, Clifford; Jensen, Ole N; Xu, Chong-Feng; Neubert, Thomas A; Skoda, Radek C; Hubbard, Stevan R; Silvennoinen, Olli
2011 ;18(9):971-976, Nature structural & molecular biology
— id: 137017, year: 2011, vol: 18, page: 971, stat: Journal Article,

Conclusions from the MIRG 2010 benchmark study: Molecular interactions in a three component system and presentation of 2011 survey results on label-free technologies
Yamniuk, A P; Yadav, S P; Bergqvist, S; Doyle, M L; Eisenstein, E; Robinson, M K; Neubert, T
2011 October 2011;22:S23-S24, Journal of biomolecular techniques
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A Novel Transcription Complex That Selectively Modulates Apoptosis of Breast Cancer Cells through Regulation of FASTKD2
Yeung, Kay T; Das, Sharmistha; Zhang, Jin; Lomniczi, Alejandro; Ojeda, Sergio R; Xu, Chong-Feng; Neubert, Thomas A; Samuels, Herbert H
2011 Jun;31(11):2287-2298, Molecular & cellular biology
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Study of Neurotrophin-3 Signaling in Primary Cultured Neurons using Multiplex Stable Isotope Labeling with Amino Acids in Cell Culture
Zhang, Guoan; Deinhardt, Katrin; Chao, Moses V; Neubert, Thomas A
2011 May 6;10(5):2546-2554, Journal of proteome research
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Comparison of three quantitative phosphoproteomic strategies to study receptor tyrosine kinase signaling
Zhang, Guoan; Neubert, Thomas A
2011 Dec 2;10(12):5454-5462, Journal of proteome research
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Recombinant derivatives of botulinum neurotoxin A engineered for trafficking studies and neuronal delivery
Band, Philip A; Blais, Steven; Neubert, Thomas A; Cardozo, Timothy J; Ichtchenko, Konstantin
2010 May;71(1):62-73, Protein expression & purification
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Canonical and alternate functions of the microRNA biogenesis machinery
Chong, Mark M W; Zhang, Guoan; Cheloufi, Sihem; Neubert, Thomas A; Hannon, Gregory J; Littman, Dan R
2010 Sep 1;24(17):1951-1960, Genes & development
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Dok-7 regulates neuromuscular synapse formation by recruiting Crk and Crk-L
Hallock, Peter T; Xu, Chong-Feng; Park, Tae-Ju; Neubert, Thomas A; Curran, Tom; Burden, Steven J
2010 Nov 1;24(21):2451-2461, Genes & development
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The matrix peptide exporter HAF-1 signals a mitochondrial UPR by activating the transcription factor ZC376.7 in C. elegans
Haynes, Cole M; Yang, Yun; Blais, Steven P; Neubert, Thomas A; Ron, David
2010 Feb 26;37(4):529-540, Molecular cell
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Matrix metalloproteinase 2 (MMP-2) degrades soluble vasculotropic amyloid-beta E22Q and L34V mutants, delaying their toxicity for human brain microvascular endothelial cells
Hernandez-Guillamon, Mar; Mawhirt, Stephanie; Fossati, Silvia; Blais, Steven; Pares, Mireia; Penalba, Anna; Boada, Merce; Couraud, Pierre-Olivier; Neubert, Thomas A; Montaner, Joan; Ghiso, Jorge; Rostagno, Agueda
2010 Aug 27;285(35):27144-27158, Journal of biological chemistry
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Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA
Kaneko, Syuzo; Li, Gang; Son, Jinsook; Xu, Chong-Feng; Margueron, Raphael; Neubert, Thomas A; Reinberg, Danny
2010 Dec 1;24(23):2615-2620, Genes & development
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Catabolism of Alzheimer's amyloid-beta: Implications for brain clearance and plaque deposition
McIntee F.L.; Neubert T.; Blais S.; Ghiso J.
2010 ;3(2):S47-S47, Clinical & Translational Science
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Super-SILAC for tumors and tissues
Neubert, TA; Tempst, P
2010 MAY ;7(5):361-362, Nature methods
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Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance
Paulovich, Amanda G; Billheimer, Dean; Ham, Amy-Joan L; Vega-Montoto, Lorenzo; Rudnick, Paul A; Tabb, David L; Wang, Pei; Blackman, Ronald K; Bunk, David M; Cardasis, Helene L; Clauser, Karl R; Kinsinger, Christopher R; Schilling, Birgit; Tegeler, Tony J; Variyath, Asokan Mulayath; Wang, Mu; Whiteaker, Jeffrey R; Zimmerman, Lisa J; Fenyo, David; Carr, Steven A; Fisher, Susan J; Gibson, Bradford W; Mesri, Mehdi; Neubert, Thomas A; Regnier, Fred E; Rodriguez, Henry; Spiegelman, Cliff; Stein, Stephen E; Tempst, Paul; Liebler, Daniel C
2010 Feb;9(2):242-254, Molecular & cellular proteomics
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Myristoylation of the dual-specificity phosphatase c-JUN N-terminal kinase (JNK) stimulatory phosphatase 1 is necessary for its activation of JNK signaling and apoptosis
Schwertassek, U; Buckley, DA; Xu, CF; Lindsay, AJ; McCaffrey, MW; Neubert, TA; Tonks, NK
2010 JUN ;277(11):2463-2473, FEBS journal
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Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry
Tabb, David L; Vega-Montoto, Lorenzo; Rudnick, Paul A; Variyath, Asokan Mulayath; Ham, Amy-Joan L; Bunk, David M; Kilpatrick, Lisa E; Billheimer, Dean D; Blackman, Ronald K; Cardasis, Helene L; Carr, Steven A; Clauser, Karl R; Jaffe, Jacob D; Kowalski, Kevin A; Neubert, Thomas A; Regnier, Fred E; Schilling, Birgit; Tegeler, Tony J; Wang, Mu; Wang, Pei; Whiteaker, Jeffrey R; Zimmerman, Lisa J; Fisher, Susan J; Gibson, Bradford W; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Stein, Stephen E; Tempst, Paul; Paulovich, Amanda G; Liebler, Daniel C; Spiegelman, Cliff
2010 Feb 5;9(2):761-776, Journal of proteome research
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Iowa variant of familial Alzheimer's disease: accumulation of posttranslationally modified AbetaD23N in parenchymal and cerebrovascular amyloid deposits
Tomidokoro, Yasushi; Rostagno, Agueda; Neubert, Thomas A; Lu, Yun; Rebeck, G William; Frangione, Blas; Greenberg, Steven M; Ghiso, Jorge
2010 Apr;176(4):1841-1854, American journal of pathology
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Overview of peptide and protein analysis by mass spectrometry
Zhang, Guoan; Annan, Roland S; Carr, Steven A; Neubert, Thomas A
2010 Nov;Chapter 16:Unit16.1-Unit16.1, Current protocols in protein science
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Protein quantitation using mass spectrometry
Zhang, Guoan; Ueberheide, Beatrix M; Waldemarson, Sofia; Myung, Sunnie; Molloy, Kelly; Eriksson, Jan; Chait, Brian T; Neubert, Thomas A; Fenyo, David
2010 ;673:211-222, Methods in molecular biology
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Oxidative protein folding by an endoplasmic reticulum-localized peroxiredoxin
Zito, Ester; Melo, Eduardo Pinho; Yang, Yun; Wahlander, Asa; Neubert, Thomas A; Ron, David
2010 Dec 10;40(5):787-797, Molecular cell
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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
Addona, TA; Abbatiello, SE; Schilling, B; Skates, SJ; Mani, DR; Bunk, DM; Spiegelman, CH; Zimmerman, LJ; Ham, AJL; Keshishian, H; Hall, SC; Allen, S; Blackman, RK; Borchers, CH; Buck, C; Cardasis, HL; Cusack, MP; Dodder, NG; Gibson, BW; Held, JM; Hiltke, T; Jackson, A; Johansen, EB; Kinsinger, CR; Li, J; Mesri, M; Neubert, TA; Niles, RK; Pulsipher, TC; Ransohoff, D; Rodriguez, H; Rudnick, PA; Smith, D; Tabb, DL; Tegeler, TJ; Variyath, AM; Vega-Montoto, LJ; Wahlander, A; Waldemarson, S; Wang, M; Whiteaker, JR; Zhao, L; Anderson, NL; Fisher, SJ; Liebler, DC; Paulovich, AG; Regnier, FE; Tempst, P; Carr, SA
2009 JUL ;27(7):633-U85, Nature biotechnology
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Identification and characterization of a novel nuclear protein complex Involved In nuclear hormone receptor-mediated gene regulation
Garapaty, Shivani; Xu, Chong-Feng; Trojer, Patrick; Mahajan, Muktar A; Neubert, Thomas A; Samuels, Herbert H
2009 Mar 20;284(12):7542-7552, Journal of biological chemistry
— id: 95312, year: 2009, vol: 284, page: 7542, stat: Journal Article,

Crystal structure of a fibroblast growth factor homologous factor (FHF) defines a conserved surface on FHFs for binding and modulation of voltage-gated sodium channels
Goetz, Regina; Dover, Katarzyna; Laezza, Fernanda; Shtraizent, Nataly; Huang, Xiao; Tchetchik, Dafna; Eliseenkova, Anna V; Xu, Chong-Feng; Neubert, Thomas A; Ornitz, David M; Goldfarb, Mitchell; Mohammadi, Moosa
2009 Jun 26;284(26):17883-17896, Journal of biological chemistry
— id: 100603, year: 2009, vol: 284, page: 17883, stat: Journal Article,

Homodimerization controls the fibroblast growth factor 9 subfamily's receptor binding and heparan sulfate-dependent diffusion in the extracellular matrix
Kalinina, Juliya; Byron, Sara A; Makarenkova, Helen P; Olsen, Shaun K; Eliseenkova, Anna V; Larochelle, William J; Dhanabal, Mohanraj; Blais, Steven; Ornitz, David M; Day, Loren A; Neubert, Thomas A; Pollock, Pamela M; Mohammadi, Moosa
2009 Sep;29(17):4663-4678, Molecular & cellular biology
— id: 156085, year: 2009, vol: 29, page: 4663, stat: Journal Article,

Dissociation of the subunits of the calcium-independent receptor of alpha-latrotoxin as a result of two-step proteolysis
Krasnoperov, Valery; Deyev, Igor E; Serova, Oxana V; Xu, Chongfeng; Lu, Yun; Buryanovsky, Leonid; Gabibov, Alexander G; Neubert, Thomas A; Petrenko, Alexander G
2009 Apr 14;48(14):3230-3238, Biochemistry
— id: 98778, year: 2009, vol: 48, page: 3230, stat: Journal Article,

The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate
Li, Yan; Trojer, Patrick; Xu, Chong-Feng; Cheung, Peggie; Kuo, Alex; Drury, William J 3rd; Qiao, Qi; Neubert, Thomas A; Xu, Rui-Ming; Gozani, Or; Reinberg, Danny
2009 Dec 4;284(49):34283-34295, Journal of biological chemistry
— id: 105498, year: 2009, vol: 284, page: 34283, stat: Journal Article,

On-membrane tryptic digestion of proteins for mass spectrometry analysis
Luque-Garcia, Jose L; Neubert, Thomas A
2009 ;536:331-341, Methods in molecular biology
— id: 99320, year: 2009, vol: 536, page: 331, stat: Journal Article,

Characterization of novel oxidation products of cysteine in an active site motif peptide of PTP1B
Shetty, Vivekananda; Neubert, Thomas A
2009 Aug;20(8):1540-1548, Journal of the American Society for Mass Spectrometry
— id: 101283, year: 2009, vol: 20, page: 1540, stat: Journal Article,

Thioredoxin-related Protein 32 Is an Arsenite-regulated Thiol Reductase of the Proteasome 19 S Particle
Wiseman, R Luke; Chin, King-Tung; Haynes, Cole M; Stanhill, Ariel; Xu, Chong-Feng; Roguev, Assen; Krogan, Nevan J; Neubert, Thomas A; Ron, David
2009 May 29;284(22):15233-15245, Journal of biological chemistry
— id: 99210, year: 2009, vol: 284, page: 15233, stat: Journal Article,

Characterization of tafazzin splice variants from humans and fruit flies
Xu, Yang; Zhang, Shali; Malhotra, Ashim; Edelman-Novemsky, Irit; Ma, Jinping; Kruppa, Antonina; Cernicica, Carolina; Blais, Steven; Neubert, Thomas A; Ren, Mindong; Schlame, Michael
2009 Oct 16;284(42):29230-29239, Journal of biological chemistry
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Evaluation of the Variation in Sample Preparation for Comparative Proteomics Using Stable Isotope Labeling by Amino Acids in Cell Culture
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2009 Mar;8(3):1285-1292, Journal of proteome research
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Use of Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) for Phosphotyrosine Protein Identification and Quantitation
Zhang, Guoan; Neubert, Thomas A
2009 ;527:409-416, Methods in molecular biology
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Isoflurane inhibits cyclic adenosine monophosphate response element-binding protein phosphorylation and calmodulin translocation to the nucleus of SH-SY5Y cells
Zhang, Jin; Sutachan, Jhon-Jairo; Montoya-Gacharna, Jose; Xu, Chong-Feng; Xu, Fang; Neubert, Thomas A; Recio-Pinto, Esperanza; Blanck, Thomas J J
2009 Oct;109(4):1127-1134, Anesthesia & analgesia
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A crystallographic snapshot of tyrosine trans-phosphorylation in action
Chen, Huaibin; Xu, Chong-Feng; Ma, Jinghong; Eliseenkova, Anna V; Li, Wanqing; Pollock, Pamela M; Pitteloud, Nelly; Miller, W Todd; Neubert, Thomas A; Mohammadi, Moosa
2008 Dec 16;105(50):19660-19665, Proceedings of the National Academy of Sciences of the United States of America
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ABRF-PRG05: de novo peptide sequence determination
Falick, Arnold M; Kowalak, Jeffrey A; Lane, William S; Phinney, Brett S; Turck, Christoph W; Weintraub, Susan T; West, Karen A; Neubert, Thomas A
2008 Sep;19(4):251-257, Journal of biomolecular techniques
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Analysis of electroblotted proteins by mass spectrometry: protein identification after Western blotting
Luque-Garcia, Jose L; Zhou, Ge; Spellman, Daniel S; Sun, Tung-Tien; Neubert, Thomas A
2008 Feb;7(2):308-314, Molecular & cellular proteomics
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Human Proteinpedia enables sharing of human protein data
Mathivanan, Suresh; Ahmed, Mukhtar; Ahn, Natalie G; Alexandre, Hainard; Amanchy, Ramars; Andrews, Philip C; Bader, Joel S; Balgley, Brian M; Bantscheff, Marcus; Bennett, Keiryn L; Bjorling, Erik; Blagoev, Blagoy; Bose, Ron; Brahmachari, Samir K; Burlingame, Alma S; Bustelo, Xose R; Cagney, Gerard; Cantin, Greg T; Cardasis, Helene L; Celis, Julio E; Chaerkady, Raghothama; Chu, Feixia; Cole, Philip A; Costello, Catherine E; Cotter, Robert J; Crockett, David; DeLany, James P; De Marzo, Angelo M; DeSouza, Leroi V; Deutsch, Eric W; Dransfield, Eric; Drewes, Gerard; Droit, Arnaud; Dunn, Michael J; Elenitoba-Johnson, Kojo; Ewing, Rob M; Van Eyk, Jennifer; Faca, Vitor; Falkner, Jayson; Fang, Xiangming; Fenselau, Catherine; Figeys, Daniel; Gagne, Pierre; Gelfi, Cecilia; Gevaert, Kris; Gimble, Jeffrey M; Gnad, Florian; Goel, Renu; Gromov, Pavel; Hanash, Samir M; Hancock, William S; Harsha, H C; Hart, Gerald; Hays, Faith; He, Fuchu; Hebbar, Prashantha; Helsens, Kenny; Hermeking, Heiko; Hide, Winston; Hjerno, Karin; Hochstrasser, Denis F; Hofmann, Oliver; Horn, David M; Hruban, Ralph H; Ibarrola, Nieves; James, Peter; Jensen, Ole N; Jensen, Pia Honnerup; Jung, Peter; Kandasamy, Kumaran; Kheterpal, Indu; Kikuno, Reiko F; Korf, Ulrike; Korner, Roman; Kuster, Bernhard; Kwon, Min-Seok; Lee, Hyoung-Joo; Lee, Young-Jin; Lefevre, Michael; Lehvaslaiho, Minna; Lescuyer, Pierre; Levander, Fredrik; Lim, Megan S; Lobke, Christian; Loo, Joseph A; Mann, Matthias; Martens, Lennart; Martinez-Heredia, Juan; McComb, Mark; McRedmond, James; Mehrle, Alexander; Menon, Rajasree; Miller, Christine A; Mischak, Harald; Mohan, S Sujatha; Mohmood, Riaz; Molina, Henrik; Moran, Michael F; Morgan, James D; Moritz, Robert; Morzel, Martine; Muddiman, David C; Nalli, Anuradha; Navarro, J Daniel; Neubert, Thomas A; Ohara, Osamu; Oliva, Rafael; Omenn, Gilbert S; Oyama, Masaaki; Paik, Young-Ki; Pennington, Kyla; Pepperkok, Rainer; Periaswamy, Balamurugan; Petricoin, Emanuel F; Poirier, Guy G; Prasad, T S Keshava; Purvine, Samuel O; Rahiman, B Abdul; Ramachandran, Prasanna; Ramachandra, Y L; Rice, Robert H; Rick, Jens; Ronnholm, Ragna H; Salonen, Johanna; Sanchez, Jean-Charles; Sayd, Thierry; Seshi, Beerelli; Shankari, Kripa; Sheng, Shi Jun; Shetty, Vivekananda; Shivakumar, K; Simpson, Richard J; Sirdeshmukh, Ravi; Siu, K W Michael; Smith, Jeffrey C; Smith, Richard D; States, David J; Sugano, Sumio; Sullivan, Matthew; Superti-Furga, Giulio; Takatalo, Maarit; Thongboonkerd, Visith; Trinidad, Jonathan C; Uhlen, Mathias; Vandekerckhove, Joel; Vasilescu, Julian; Veenstra, Timothy D; Vidal-Taboada, Jose-Manuel; Vihinen, Mauno; Wait, Robin; Wang, Xiaoyue; Wiemann, Stefan; Wu, Billy; Xu, Tao; Yates, John R; Zhong, Jun; Zhou, Ming; Zhu, Yunping; Zurbig, Petra; Pandey, Akhilesh
2008 Feb;26(2):164-167, Nature biotechnology
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Calsyntenins Are Secretory Granule Proteins in Anterior Pituitary Gland and Pancreatic Islet {alpha} Cells
Rindler, Michael J; Xu, Chong-Feng; Gumper, Iwona; Cen, Chuan; Sonderegger, Peter; Neubert, Thomas A
2008 Apr;56(4):381-388, Journal of histochemistry & cytochemistry
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Stable isotopic labeling of amino acids in cultured primary neurons: Application to BDNF-dependent phosphotyrosine-associated signaling
Spellman, Daniel S; Deinhardt, Katrin; Darie, Costel C; Chao, Moses V; Neubert, Thomas A
2008 Jun;7(6):1067-1076, Molecular & cellular proteomics
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Guidelines for reporting the use of mass spectrometry in proteomics
Taylor, Chris F; Binz, Pierre-Alain; Aebersold, Ruedi; Affolter, Michel; Barkovich, Robert; Deutsch, Eric W; Horn, David M; Huhmer, Andreas; Kussmann, Martin; Lilley, Kathryn; Macht, Marcus; Mann, Matthias; Muller, Dieter; Neubert, Thomas A; Nickson, Janice; Patterson, Scott D; Raso, Roberto; Resing, Kathryn; Seymour, Sean L; Tsugita, Akira; Xenarios, Ioannis; Zeng, Rong; Julian, Randall K Jr
2008 Aug;26(8):860-861, Nature biotechnology
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Phosphorylation of liver X receptor alpha selectively regulates target gene expression in macrophages
Torra, Ines Pineda; Ismaili, Naima; Feig, Jonathan E; Xu, Chong-Feng; Cavasotto, Claudio; Pancratov, Raluca; Rogatsky, Inez; Neubert, Thomas A; Fisher, Edward A; Garabedian, Michael J
2008 Apr;28(8):2626-2636, Molecular & cellular biology
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Histoplasma capsulatum proteome response to decreased iron availability
Winters, Michael S; Spellman, Daniel S; Chan, Qilin; Gomez, Francisco J; Hernandez, Margarita; Catron, Brittany; Smulian, Alan G; Neubert, Thomas A; Deepe, George S Jr
2008 ;6:36-36, Proteome science
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Structural and biochemical characterization of the KRLB region in insulin receptor substrate-2
Wu, Jinhua; Tseng, Yolanda D; Xu, Chong-Feng; Neubert, Thomas A; White, Morris F; Hubbard, Stevan R
2008 Mar;15(3):251-258, Nature structural & molecular biology
— id: 76468, year: 2008, vol: 15, page: 251, stat: Journal Article,

Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans
Yun, Chi; Stanhill, Ariel; Yang, Yun; Zhang, Yuhong; Haynes, Cole M; Xu, Chong-Feng; Neubert, Thomas A; Mor, Adam; Philips, Mark R; Ron, David
2008 May 13;105(19):7094-7099, Proceedings of the National Academy of Sciences of the United States of America
— id: 94504, year: 2008, vol: 105, page: 7094, stat: Journal Article,

Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2008 Nov;7(11):4715-4726, Journal of proteome research
— id: 91446, year: 2008, vol: 7, page: 4715, stat: Journal Article,

Use of DNA ladders for reproducible protein fractionation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (sds-page) for quantitative proteomics
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2008 Feb;7(2):678-686, Journal of proteome research
— id: 76649, year: 2008, vol: 7, page: 678, stat: Journal Article,

ABRF-PRG04: differentiation of protein isoforms
Arnott, David; Gawinowicz, Mary Ann; Kowalak, Jeffrey A; Lane, William S; Speicher, Kaye D; Turck, Christoph W; West, Karen A; Neubert, Thomas A
2007 Apr;18(2):124-134, Journal of biomolecular techniques
— id: 72970, year: 2007, vol: 18, page: 124, stat: Journal Article,

A molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases
Chen, Huaibin; Ma, Jinghong; Li, Wanqing; Eliseenkova, Anna V; Xu, Chongfeng; Neubert, Thomas A; Miller, W Todd; Mohammadi, Moosa
2007 Sep 7;27(5):717-730, Molecular cell
— id: 73939, year: 2007, vol: 27, page: 717, stat: Journal Article,

Molecular insights into the klotho-dependent, endocrine mode of action of fibroblast growth factor 19 subfamily members
Goetz, Regina; Beenken, Andrew; Ibrahimi, Omar A; Kalinina, Juliya; Olsen, Shaun K; Eliseenkova, Anna V; Xu, ChongFeng; Neubert, Thomas A; Zhang, Fuming; Linhardt, Robert J; Yu, Xijie; White, Kenneth E; Inagaki, Takeshi; Kliewer, Steven A; Yamamoto, Masaya; Kurosu, Hiroshi; Ogawa, Yasushi; Kuro-o, Makoto; Lanske, Beate; Razzaque, Mohammed S; Mohammadi, Moosa
2007 May;27(9):3417-3428, Molecular & cellular biology
— id: 71392, year: 2007, vol: 27, page: 3417, stat: Journal Article,

Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry
Luque-Garcia, Jose L; Neubert, Thomas A
2007 Jun 15;1153(1-2):259-276, Journal of chromatography
— id: 71394, year: 2007, vol: 1153, page: 259, stat: Journal Article,

Using SILAC to Study Cell Signaling in Neurons
Neubert, Thomas A
[S.l.] : NIH, 2007,
— id: 1432, year: 2007, vol: , page: , stat: ,

Proteomic analysis of exfoliation deposits
Ovodenko, Boris; Rostagno, Agueda; Neubert, Thomas A; Shetty, Vivekananda; Thomas, Stefani; Yang, Austin; Liebmann, Jeffrey; Ghiso, Jorge; Ritch, Robert
2007 Apr;48(4):1447-1457, Investigative ophthalmology & visual science. IOVS
— id: 71391, year: 2007, vol: 48, page: 1447, stat: Journal Article,

Proteomic Analysis of Pancreatic Zymogen Granules: Identification of New Granule Proteins
Rindler, Michael J; Xu, Chong-Feng; Gumper, Iwona; Smith, Nora N; Neubert, Thomas A
2007 Aug;6(8):2978-2992, Journal of proteome research
— id: 72969, year: 2007, vol: 6, page: 2978, stat: Journal Article,

Characterization by tandem mass spectrometry of stable cysteine sulfenic acid in a cysteine switch peptide of matrix metalloproteinases
Shetty, Vivekananda; Spellman, Daniel S; Neubert, Thomas A
2007 Aug;18(8):1544-1551, Journal of the American Society for Mass Spectrometry
— id: 73855, year: 2007, vol: 18, page: 1544, stat: Journal Article,

The minimum information about a proteomics experiment (MIAPE)
Taylor, Chris F; Paton, Norman W; Lilley, Kathryn S; Binz, Pierre-Alain; Julian, Randall K Jr; Jones, Andrew R; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W; Dunn, Michael J; Heck, Albert J R; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A; Patterson, Scott D; Ping, Peipei; Seymour, Sean L; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M; Whitelegge, Julian P; Wilkins, Marc R; Xenarios, Ioannnis; Yates, John R 3rd; Hermjakob, Henning
2007 Aug;25(8):887-893, Nature biotechnology
— id: 73905, year: 2007, vol: 25, page: 887, stat: Journal Article,

Selective enrichment and fractionation of phosphopeptides from peptide mixtures by isoelectric focusing after methyl esterification
Xu, Chong-Feng; Wang, Huaibin; Li, Daming; Kong, Xiang-Peng; Neubert, Thomas A
2007 Mar 1;79(5):2007-2014, Analytical chemistry
— id: 71393, year: 2007, vol: 79, page: 2007, stat: Journal Article,

Use of nitrocellulose membranes for protein characterization by matrix-assisted laser desorption/ionization mass spectrometry
Luque-Garcia, Jose L; Zhou, Ge; Sun, Tung-Tien; Neubert, Thomas A
2006 Jul 15;78(14):5102-5108, Analytical chemistry
— id: 71579, year: 2006, vol: 78, page: 5102, stat: Journal Article,

Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling
Zhang, Guoan; Neubert, Thomas A
2006 Feb;5(2):401-411, Molecular & cellular proteomics
— id: 61371, year: 2006, vol: 5, page: 401, stat: Journal Article,

Use of detergents to increase selectivity of immunoprecipitation of tyrosine phosphorylated peptides prior to identification by MALDI quadrupole-TOF MS
Zhang, Guoan; Neubert, Thomas A
2006 Jan;6(2):571-578, Proteomics
— id: 76653, year: 2006, vol: 6, page: 571, stat: Journal Article,

Quantitative phosphotyrosine proteomics of EphB2 signaling by stable isotope labeling with amino acids in cell culture (SILAC)
Zhang, Guoan; Spellman, Daniel S; Skolnik, Edward Y; Neubert, Thomas A
2006 Mar;5(3):581-588, Journal of proteome research
— id: 76652, year: 2006, vol: 5, page: 581, stat: Journal Article,

Familial Danish dementia: co-existence of Danish and Alzheimer amyloid subunits (ADan AND A{beta}) in the absence of compact plaques
Tomidokoro, Yasushi; Lashley, Tammaryn; Rostagno, Agueda; Neubert, Thomas A; Bojsen-Moller, Marie; Braendgaard, Hans; Plant, Gordon; Holton, Janice; Frangione, Blas; Revesz, Tamas; Ghiso, Jorge
2005 Nov 4;280(44):36883-36894, Journal of biological chemistry
— id: 61252, year: 2005, vol: 280, page: 36883, stat: Journal Article,

Identification of phosphopeptides by MALDI Q-TOF mass spectrometry in positive and negative ion modes after methyl esterification
Xu, Chong-Feng; Lu, Yun; Ma, Jinghong; Mohammadi, Moosa; Neubert, Thomas A
2005 Jun;4(6):809-818, Molecular & cellular proteomics
— id: 50627, year: 2005, vol: 4, page: 809, stat: Journal Article,

Cleavage of p75 Neurotrophin Receptor by {alpha}-Secretase and {gamma}-Secretase Requires Specific Receptor Domains
Zampieri, Niccolo; Xu, Chong-Feng; Neubert, Thomas A; Chao, Moses V
2005 Apr 15;280(15):14563-14571, Journal of biological chemistry
— id: 50628, year: 2005, vol: 280, page: 14563, stat: Journal Article,

Identification and verification of novel rodent postsynaptic density proteins
Jordan, Bryen A; Fernholz, Brian D; Boussac, Muriel; Xu, Chongfeng; Grigorean, Gabriela; Ziff, Edward B; Neubert, Thomas A
2004 Sep;3(9):857-871, Molecular & cellular proteomics
— id: 48196, year: 2004, vol: 3, page: 857, stat: Journal Article,

The N-terminal SH4 region of the Src family kinase Fyn is modified by methylation and heterogeneous fatty acylation: role in membrane targeting, cell adhesion, and spreading
Liang, Xiquan; Lu, Yun; Wilkes, Meredith; Neubert, Thomas A; Resh, Marilyn D
2004 Feb 27;279(9):8133-8139, Journal of biological chemistry
— id: 42155, year: 2004, vol: 279, page: 8133, stat: Journal Article,

ABRF-PRG03: phosphorylation site determination
Arnott, David; Gawinowicz, Mary Ann; Grant, Raymond A; Neubert, Thomas A; Packman, Len C; Speicher, Kaye D; Stone, Kathryn; Turck, Christoph W
2003 Sep;14(3):205-215, Journal of biomolecular techniques
— id: 38150, year: 2003, vol: 14, page: 205, stat: Journal Article,

Facilitated forward chemical genetics using a tagged triazine library and zebrafish embryo screening
Khersonsky, Sonya M; Jung, Da-Woon; Kang, Tae-Wook; Walsh, Daniel P; Moon, Ho-Sang; Jo, Hakryul; Jacobson, Eric M; Shetty, Vivekananda; Neubert, Thomas A; Chang, Young-Tae
2003 Oct 1;125(39):11804-11805, Journal of the American Chemical Society
— id: 38149, year: 2003, vol: 125, page: 11804, stat: Journal Article,

The CD26-related dipeptidyl aminopeptidase-like protein DPPX is a critical component of neuronal A-type K+ channels
Nadal, Marcela S; Ozaita, Andres; Amarillo, Yimy; Vega-Saenz de Miera, Eleazar; Ma, Yuliang; Mo, Wenjun; Goldberg, Ethan M; Misumi, Yoshio; Ikehara, Yukio; Neubert, Thomas A; Rudy, Bernardo
2003 Feb 6;37(3):449-461, Neuron
— id: 38424, year: 2003, vol: 37, page: 449, stat: Journal Article,

Could TCR antagonism explain associations between MHC genes and disease?
Vukmanovic, Stanislav; Neubert, Thomas A; Santori, Fabio R
2003 Apr;9(4):139-146, Trends in molecular medicine
— id: 34691, year: 2003, vol: 9, page: 139, stat: Journal Article,

Protein-tyrosine Phosphatase-sigma Is a Novel Member of the Functional Family of alpha -Latrotoxin Receptors
Krasnoperov, Valery; Bittner, Mary A; Mo, Wenjun; Buryanovsky, Leonid; Neubert, Thomas A; Holz, Ronald W; Ichtchenko, Konstantin; Petrenko, Alexander G
2002 Sep 27;277(39):35887-35895, Journal of biological chemistry
— id: 32497, year: 2002, vol: 277, page: 35887, stat: Journal Article,

Post-translational proteolytic processing of the calcium-independent receptor of alpha-latrotoxin (CIRL), a natural chimera of the cell adhesion protein and the G protein-coupled receptor. Role of the G protein-coupled receptor proteolysis site (GPS) motif
Kr