Alexander R Statnikov

INFLAMMATORY GENOMIC AND PLASMA BIOMARKERS PREDICT PROGRESSION OF SYMPTOMATIC KNEE OA (SKOA)
Attur, M.; Statnikov, A.; Aliferis, C. F.; Li, Z.; Krasnokutsky, S.; Samuels, J.; Greenberg, J. D.; Patel, J.; Oh, C.; Lu, Q. A.; Ramirez, R.; Todd, J.; Abramson, S. B.
2012 APR;20 1 1:S34-S35, Osteoarthritis & cartilage
— id: 166845, year: 2012, vol: 20 1 1, page: S34, stat: Journal Article,

Regression of atherosclerosis is characterized by broad changes in the plaque macrophage transcriptome
Feig, Jonathan E; Vengrenyuk, Yuliya; Reiser, Vladimir; Wu, Chaowei; Statnikov, Alexander; Aliferis, Constantin F; Garabedian, Michael J; Fisher, Edward A; Puig, Oscar
2012 ;7(6):e39790-e39790 e39790, PLoS ONE
— id: 171139, year: 2012, vol: 7, page: e39790, stat: Journal Article,

In silico prediction of the neutralization range of human anti-HIV monoclonal antibodies
Shmelkov, E.; Krachmarov, C.; Grigoryan, A.; Agarwal, A.; Statnikov, A.; Cardozo, T.
2012 SEP 13;9 2 2:-, Retrovirology
— id: 181582, year: 2012, vol: 9 2 2, page: , stat: Journal Article,

New methods for separating causes from effects in genomics data
Statnikov, Alexander; Henaff, Mikael; Lytkin, Nikita I; Aliferis, Constantin F
2012 ;13 Suppl 8:S22-S22 S22, BMC genomics
— id: 211162, year: 2012, vol: 13 Suppl 8, page: S22, stat: Journal Article,

Multicriteria Engineering Optimization Problems: Statement, Solution and Applications
Statnikov, Roman; Matusov, Josef; Statnikov, Alexander
2012 NOV;155(2):355-375, Journal of optimization theory & applications
— id: 198192, year: 2012, vol: 155, page: 355, stat: Journal Article,

Causal graph-based analysis of genome-wide association data in rheumatoid arthritis
Alekseyenko, Alexander V; Lytkin, Nikita I; Ai, Jizhou; Ding, Bo; Padyukov, Leonid; Aliferis, Constantin F; Statnikov, Alexander
2011 ;6:25-25, Biology direct
— id: 134450, year: 2011, vol: 6, page: 25, stat: Journal Article,

Trends and developments in bioinformatics in 2010: prospects and perspectives
Aliferis, C F; Alekseyenko, A V; Aphinyanaphongs, Y; Brown, S; Fenyo, D; Fu, L; Shen, S; Statnikov, A; Wang, J
2011 ;6(1):146-155, Yearbook of medical informatics
— id: 174460, year: 2011, vol: 6, page: 146, stat: Journal Article,

Expanding the understanding of biases in development of clinical-grade molecular signatures: a case study in acute respiratory viral infections
Lytkin, Nikita I; McVoy, Lauren; Weitkamp, Jorn-Hendrik; Aliferis, Constantin F; Statnikov, Alexander
2011 ;6(6):e20662-e20662, PLoS ONE
— id: 134463, year: 2011, vol: 6, page: e20662, stat: Journal Article,

A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks
Narendra, Varun; Lytkin, Nikita I; Aliferis, Constantin F; Statnikov, Alexander
2011 Jan;97(1):7-18, Genomics
— id: 119225, year: 2011, vol: 97, page: 7, stat: Journal Article,

Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale
Shmelkov, Evgeny; Tang, Zuojian; Aifantis, Iannis; Statnikov, Alexander
2011 ;6:15-15, Biology direct
— id: 127234, year: 2011, vol: 6, page: 15, stat: Journal Article,

A gentle introduction to support vector machines in biomedicine :
Statnikov, Alexander Romanovich; Aliferis, Constantin F; Hardin, Douglas P; Guyon, Isabelle
Hackensack, NJ : World Scientific, c2011,
— id: 174597, year: 2011, vol: , page: ?, stat: ,

DBS-PSI: a new paradigm of database search
Statnikov, R.; Bordetsky, A.; Matusov, J.; Statnikov, A.
2011 ;4(1):1-1313, International Journal of Services Science
— id: 145690, year: 2011, vol: 4, page: 1, stat: Journal Article,

Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification Part I: Algorithms and Empirical Evaluation
Aliferis, CF; Statnikov, A; Tsamardinos, I; Mani, S; Koutsoukos, XD
2010 JAN ;11(17):171-234, Journal of machine learning research : JMLR
— id: 109685, year: 2010, vol: 11, page: 171, stat: Journal Article,

Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification Part II: Analysis and Extensions
Aliferis, CF; Statnikov, A; Tsamardinos, I; Mani, S; Koutsoukos, XD
2010 JAN ;11:235-284, Journal of machine learning research : JMLR
— id: 109686, year: 2010, vol: 11, page: 235, stat: Journal Article,

The Notch/Hes1 pathway sustains NF-kappaB activation through CYLD repression in T cell leukemia
Espinosa, Lluis; Cathelin, Severine; D'Altri, Teresa; Trimarchi, Thomas; Statnikov, Alexander; Guiu, Jordi; Rodilla, Veronica; Ingles-Esteve, Julia; Nomdedeu, Josep; Bellosillo, Beatriz; Besses, Carles; Abdel-Wahab, Omar; Kucine, Nicole; Sun, Shao-Cong; Song, Guangchan; Mullighan, Charles C; Levine, Ross L; Rajewsky, Klaus; Aifantis, Iannis; Bigas, Anna
2010 Sep 14;18(3):268-281, Cancer cell
— id: 133795, year: 2010, vol: 18, page: 268, stat: Journal Article,

Analysis and computational dissection of molecular signature multiplicity
Statnikov, Alexander; Aliferis, Constantin F
2010 ;6(5):e1000790-e1000790, PLoS Computational Biology
— id: 109810, year: 2010, vol: 6, page: e1000790, stat: Journal Article,

Using gene expression profiles from peripheral blood to identify asymptomatic responses to acute respiratory viral infections
Statnikov, Alexander; Lytkin, Nikita I; McVoy, Lauren; Weitkamp, Jorn-Hendrik; Aliferis, Constantin F
2010 ;3:264-264, BMC research notes
— id: 114181, year: 2010, vol: 3, page: 264, stat: Journal Article,

Improving development of the molecular signature for diagnosis of acute respiratory viral infections
Statnikov, Alexander; McVoy, Lauren; Lytkin, Nikita; Aliferis, Constantin F
2010 Feb 18;7(2):100-1; author reply 102, Cell Host & Microbe
— id: 107288, year: 2010, vol: 7, page: 100, stat: Journal Article,

Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data
Aliferis, Constantin F; Statnikov, Alexander; Tsamardinos, Ioannis; Schildcrout, Jonathan S; Shepherd, Bryan E; Harrell, Frank E Jr
2009 ;4(3):e4922-e4922, PLoS ONE
— id: 104082, year: 2009, vol: 4, page: e4922, stat: Journal Article,

A statistical reappraisal of the findings of an esophageal cancer genome-wide association study
Statnikov, Alexander; Li, Chun; Aliferis, Constantin F
2008 Apr 15;68(8):3074-5; author reply 3075, Cancer research
— id: 86988, year: 2008, vol: 68, page: 3074, stat: Journal Article,

A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
Statnikov, Alexander; Wang, Lily; Aliferis, Constantin F
2008 ;9:319-319, BMC bioinformatics
— id: 86987, year: 2008, vol: 9, page: 319, stat: Journal Article,

Are random forests better than support vector machines for microarray-based cancer classification?
Statnikov, Alexander; Aliferis, Constantin F
2007 ;:686-690, AMIA ... Annual Symposium proceedings
— id: 86986, year: 2007, vol: , page: 686, stat: Journal Article,

Effects of environment, genetics and data analysis pitfalls in an esophageal cancer genome-wide association study
Statnikov, Alexander; Li, Chun; Aliferis, Constantin F
2007 ;2(9):e958-e958, PLoS ONE
— id: 86990, year: 2007, vol: 2, page: e958, stat: Journal Article,

Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective
Aliferis, Constantin F; Statnikov, Alexander; Tsamardinos, Ioannis
2006 ;2:133-162, Cancer informatics
— id: 104089, year: 2006, vol: 2, page: 133, stat: Journal Article,

A comparison of citation metrics to machine learning filters for the identification of high quality MEDLINE documents
Aphinyanaphongs, Yindalon; Statnikov, Alexander; Aliferis, Constantin F
2006 Jul-Aug;13(4):446-455, Journal of the American Medical Informatics Association
— id: 86993, year: 2006, vol: 13, page: 446, stat: Journal Article,

Text categorization models for high-quality article retrieval in internal medicine
Aphinyanaphongs, Yindalon; Tsamardinos, Ioannis; Statnikov, Alexander; Hardin, Douglas; Aliferis, Constantin F
2005 Mar-Apr;12(2):207-216, Journal of the American Medical Informatics Association
— id: 86997, year: 2005, vol: 12, page: 207, stat: Journal Article,

Extracting drug-drug interaction articles from MEDLINE to improve the content of drug databases
Duda, Stephany; Aliferis, Constantin; Miller, Randolph; Statnikov, Alexander; Johnson, Kevin
2005 ;:216-220, AMIA ... Annual Symposium proceedings
— id: 103977, year: 2005, vol: , page: 216, stat: Journal Article,

A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
Statnikov, Alexander; Aliferis, Constantin F; Tsamardinos, Ioannis; Hardin, Douglas; Levy, Shawn
2005 Mar 1;21(5):631-643, Bioinformatics
— id: 86998, year: 2005, vol: 21, page: 631, stat: Journal Article,

GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data
Statnikov, Alexander; Tsamardinos, Ioannis; Dosbayev, Yerbolat; Aliferis, Constantin F
2005 Aug;74(7-8):491-503, International journal of medical informatics
— id: 86996, year: 2005, vol: 74, page: 491, stat: Journal Article,

Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development
Statnikov, Alexander; Aliferis, Constantin F; Tsamardinos, Ioannis
2004 ;107(Pt 2):813-817, Studies in health technology & informatics
— id: 86999, year: 2004, vol: 107, page: 813, stat: Journal Article,

HITON: a novel Markov Blanket algorithm for optimal variable selection
Aliferis, C F; Tsamardinos, I; Statnikov, A
2003 ;:21-25, AMIA ... Annual Symposium proceedings
— id: 87003, year: 2003, vol: , page: 21, stat: Journal Article,