Thomas A. Neubert

Biosketch / Results /

Thomas A. Neubert, Ph.D.

Associate Professor; Director - Proteomics Core
Department of Biochemistry and Molecular Pharmacology and Structural Biology

Contact Info

Address
540 First Avenue
Floor 5 Room Lab 18
Skirball Institute
New York, NY 10016-6481

212-263-7265
212-263-8214
Thomas.Neubert@med.nyu.edu


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Education

1990 — Dr. Neubert received his Ph.D. in Immunology and Infectious Diseases from Johns Hopkins University, Graduate Education
— Postdoctoral fellow with Dr. James B. Hurley in the Department of Biochemistry at the University of Washington (1990-1994) and with Dr. Lubert Stryer in the Department of Neurobiology at Stanford University (1995), PostDoctoral Training
1990 — Johns Hopkins Univ, Medical Education

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All data from NYU Health Sciences Library Faculty Bibliography — -

Contact:
http://hsl.med.nyu.edu/faculty-bibliography-search

Antipsychotics Activate mTORC1-Dependent Translation to Enhance Neuronal Morphological Complexity
Bowling, Heather; Zhang, Guoan; Bhattacharya, Aditi; Perez-Cuesta, Luis M; Deinhardt, Katrin; Hoeffer, Charles A; Neubert, Thomas A; Gan, Wen-Biao; Klann, Eric; Chao, Moses V
2014 ;7(308):ra4-ra4 ra4, Science signaling
— id: 741242, year: 2014, vol: 7, page: ra4, stat: Journal Article,

Proteome Informatics Research Group (iPRG)_2012: A Study on Detecting Modified Peptides in a Complex Mixture
Chalkley, Robert J; Bandeira, Nuno; Chambers, Matthew C; Clauser, Karl R; Cottrell, John S; Deutsch, Eric W; Kapp, Eugene A; Lam, Henry H N; McDonald, W Hayes; Neubert, Thomas A; Sun, Rui-Xiang
2014 Jan;13(1):360-371, Molecular & cellular proteomics
— id: 781292, year: 2014, vol: 13, page: 360, stat: Journal Article,

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) for Quantitative Proteomics
Hoedt, Esthelle; Zhang, Guoan; Neubert, Thomas A
2014 ;806:93-106, Advances in experimental medicine & biology
— id: 1050822, year: 2014, vol: 806, page: 93, stat: Journal Article,

DFG-out Mode of Inhibition by an Irreversible type-1 Inhibitor Capable of Overcoming Gate-Keeper Mutations in FGF Receptors
Huang, Zhifeng; Tan, Li; Wang, Huiyan; Liu, Yang; Blais, Steven; Deng, Jingjing; Neubert, Thomas A; Gray, Nathanael S; Li, Xiaokun; Mohammadi, Moosa
2014 Oct;:1-23, ACS chemical biology
— id: 1310152, year: 2014, vol: , page: 1, stat: Journal Article,

Proteome analysis reveals roles of L-DOPA in response to oxidative stress in neurons
Jami, Mohammad-Saeid; Pal, Ramavati; Hoedt, Esthelle; Neubert, Thomas A; Larsen, Jan Petter; Moller, Simon Geir
2014 Jul;15(1):93-93, BMC neuroscience
— id: 1090382, year: 2014, vol: 15, page: 93, stat: Journal Article,

gammaCaMKII Shuttles Ca(2+)/CaM to the Nucleus to Trigger CREB Phosphorylation and Gene Expression
Ma, Huan; Groth, Rachel D; Cohen, Samuel M; Emery, John F; Li, Boxing; Hoedt, Esthelle; Zhang, Guoan; Neubert, Thomas A; Tsien, Richard W
2014 Oct;159(2):281-294, Cell
— id: 1300222, year: 2014, vol: 159, page: 281, stat: Journal Article,

Dephosphorylation of Tyrosine 393 in Argonaute 2 by Protein Tyrosine Phosphatase 1B Regulates Gene Silencing in Oncogenic RAS-Induced Senescence
Yang, Ming; Haase, Astrid D; Huang, Fang-Ke; Coulis, Gerald; Rivera, Keith D; Dickinson, Bryan C; Chang, Christopher J; Pappin, Darryl J; Neubert, Thomas A; Hannon, Gregory J; Boivin, Benoit; Tonks, Nicholas K
2014 Sep;55(5):782-790, Molecular cell
— id: 1180612, year: 2014, vol: 55, page: 782, stat: Journal Article,

Overview of Peptide and protein analysis by mass spectrometry
Zhang, Guoan; Annan, Roland S; Carr, Steven A; Neubert, Thomas A
2014 ;108:10.21.1-10.21.30, Current protocols in molecular biology
— id: 1282972, year: 2014, vol: 108, page: 10.21.1, stat: Journal Article,

In-depth Quantitative Proteomic Analysis of De Novo Protein Synthesis Induced by Brain-derived Neurotrophic Factor
Zhang, Guoan; Bowling, Heather; Hom, Nancy; Kirshenbaum, Kent; Klann, Eric; Chao, Moses V; Neubert, Thomas A
2014 Oct;:831-844, Journal of proteome research
— id: 1282932, year: 2014, vol: , page: 831, stat: Journal Article,

Stable isotope labeling by amino acids in cultured primary neurons
Zhang, Guoan; Deinhardt, Katrin; Neubert, Thomas A
2014 ;1188:57-64, Methods in molecular biology
— id: 1089482, year: 2014, vol: 1188, page: 57, stat: Journal Article,

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)
Abbatiello, Susan E; Mani, D R; Schilling, Birgit; Maclean, Brendan; Zimmerman, Lisa J; Feng, Xingdong; Cusack, Michael P; Sedransk, Nell; Hall, Steven C; Addona, Terri; Allen, Simon; Dodder, Nathan G; Ghosh, Mousumi; Held, Jason M; Hedrick, Victoria; Inerowicz, H Dorota; Jackson, Angela; Keshishian, Hasmik; Kim, Jong Won; Lyssand, John S; Riley, C Paige; Rudnick, Paul; Sadowski, Pawel; Shaddox, Kent; Smith, Derek; Tomazela, Daniela; Wahlander, Asa; Waldemarson, Sofia; Whitwell, Corbin A; You, Jinsam; Zhang, Shucha; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Borchers, Christoph H; Buck, Charles; Fisher, Susan J; Gibson, Bradford W; Liebler, Daniel; Maccoss, Michael; Neubert, Thomas A; Paulovich, Amanda; Regnier, Fred; Skates, Steven J; Tempst, Paul; Wang, Mu; Carr, Steven A
2013 Sep;12(9):2623-2639, Molecular & cellular proteomics
— id: 557832, year: 2013, vol: 12, page: 2623, stat: Journal Article,

Ionotropic glutamate receptors IR64a and IR8a form a functional odorant receptor complex in vivo in Drosophila
Ai, Minrong; Blais, Steven; Park, Jin-Yong; Min, Soohong; Neubert, Thomas A; Suh, Greg S B
2013 Jun;33(26):10741-10749, Journal of neuroscience
— id: 509072, year: 2013, vol: 33, page: 10741, stat: Journal Article,

Detection and correction of interference in SRM analysis
Bao, Y; Waldemarson, S; Zhang, G; Wahlander, A; Ueberheide, B; Myung, S; Reed, B; Molloy, K; Padovan, J C; Eriksson, J; Neubert, T A; Chait, B T; Fenyo, D
2013 Jun;61(3):299-303, Methods
— id: 415052, year: 2013, vol: 61, page: 299, stat: Journal Article,

Comparison of commercially available target enrichment methods for next-generation sequencing
Bodi, K; Perera, A G; Adams, P S; Bintzler, D; Dewar, K; Grove, D S; Kieleczawa, J; Lyons, R H; Neubert, T A; Noll, A C; Singh, S; Steen, R; Zianni, M
2013 Jul;24(2):73-86, Journal of biomolecular techniques
— id: 452232, year: 2013, vol: 24, page: 73, stat: Journal Article,

Sterile brain abscess due to juvenile xanthogranuloma: DWI characteristics
Bushnell, Philip J.; Strupp, Barbara J.; Rice, Margaret E.; Avshalumov, Marat V.; Patel, Jyoti C.; Hrabetova, Sabina; Nicholson, Charles; Jordan, Bryen A.; Fernholz, Brian D.; Neubert, Thomas A.; Ziff, Edward B.; Faltz, Lawrence L; Morley, John N; Flink, Ellen; Dameron, Peg DeHont; Al-Ibrahim, Mohamed S.; Gross, Joyce Y.; Albertson, Donna G; Rose, Ann M; Villeneuve, Anne M; Batuman, Fatma; Bean-Mayberry, Bevanne; Goldzweig, Caroline; Huang, Christine; Miake-Lye, Isomi M; Washington, Donna L; Yano, Elizabeth M; Zephyrin, Laurie C; Shekelle, Paul G; Walton, Kerry D.; Llinas, Rodolfo R.; Kwak, Ellie S; Marrero, Daniel E; Pfannl, Rolf; Erbay, Sami H
2013 Jul;23(3):437-440, Journal of neuroimaging
— id: 1012782, year: 2013, vol: 23, page: 437, stat: Journal Article,

The N550K/H mutations in FGFR2 confer differential resistance to PD173074, dovitinib, and ponatinib ATP-competitive inhibitors
Byron, Sara A; Chen, Huaibin; Wortmann, Andreas; Loch, David; Gartside, Michael G; Dehkhoda, Farhad; Blais, Steven P; Neubert, Thomas A; Mohammadi, Moosa; Pollock, Pamela M
2013 Aug;15(8):975-988, Neoplasia
— id: 575672, year: 2013, vol: 15, page: 975, stat: Journal Article,

Cracking the Molecular Origin of Intrinsic Tyrosine Kinase Activity through Analysis of Pathogenic Gain-of-Function Mutations
Chen, Huaibin; Huang, Zhifeng; Dutta, Kaushik; Blais, Steven; Neubert, Thomas A; Li, Xiaokun; Cowburn, David; Traaseth, Nathaniel J; Mohammadi, Moosa
2013 Jul;4(2):376-384, Cell reports
— id: 463582, year: 2013, vol: 4, page: 376, stat: Journal Article,

Structural Mimicry of A-Loop Tyrosine Phosphorylation by a Pathogenic FGF Receptor 3 Mutation
Huang, Zhifeng; Chen, Huaibin; Blais, Steven; Neubert, Thomas A; Li, Xiaokun; Mohammadi, Moosa
2013 Oct;21(10):1889-1896, Structure
— id: 573812, year: 2013, vol: 21, page: 1889, stat: Journal Article,

Comparative proteomic analysis of the ATP-sensitive K(+) channel complex in different tissue types
Kefaloyianni, Eirini; Lyssand, John S; Moreno, Cesar; Delaroche, Diane; Hong, Miyoun; Fenyo, David; Mobbs, Charles V; Neubert, Thomas A; Coetzee, William A
2013 Jan;13(2):368-378, Proteomics
— id: 213632, year: 2013, vol: 13, page: 368, stat: Journal Article,

Brain-Derived Neurotrophic Factor Signaling Rewrites the Glucocorticoid Transcriptome via Glucocorticoid Receptor Phosphorylation
Lambert, W Marcus; Xu, Chong-Feng; Neubert, Thomas A; Chao, Moses V; Garabedian, Michael J; Jeanneteau, Freddy D
2013 Sep;33(18):3700-3714, Molecular & cellular biology
— id: 540352, year: 2013, vol: 33, page: 3700, stat: Journal Article,

Brain-Derived Neurotrophic Factor Signaling Rewrites the Glucocorticoid Transcriptome via Glucocorticoid Receptor Phosphorylation (vol 33, pg 3700, 2013)
Lambert, W. Marcus; Xu, Chong-Feng; Neubert, Thomas A.; Chao, Moses V.; Garabedian, Michael J.; Jeanneteau, Freddy D.
2013 OCT;33(20):4138-4138, Molecular & cellular biology
— id: 612042, year: 2013, vol: 33, page: 4138, stat: Journal Article,

Brain-derived neurotrophic factor signaling rewrites the glucocorticoid transcriptome via glucocorticoid receptor phosphorylation
Marcus, Lambert W; Xu, C -F; Neubert, T A; Chao, M V; Garabedian, M J; Jeanneteau, F D
2013 2013;33(20):4138-, Molecular & cellular biology
— id: 612462, year: 2013, vol: 33, page: 4138, stat: Journal Article,

Development of a biosensor for detection of pleural mesothelioma cancer biomarker using surface imprinting
Mathur, Aabhas; Blais, Steven; Goparaju, Chandra M V; Neubert, Thomas; Pass, Harvey; Levon, Kalle
2013 ;8(3):e57681-e57681 e57681, PLoS one
— id: 753322, year: 2013, vol: 8, page: e57681, stat: Journal Article,

Exploring the role of conformational heterogeneity in the V1/V2 domain of HIV-1 gp120 on the immunological properties of Env immunogens
Pinter, Abraham; Neubert, Thomas; Burkhart, Michael; Irene, Carmela; Reichman, Charles; Honnen, William J.
2013 APR;62 1 1:53-53, Journal of acquired immune deficiency syndromes. JAIDS
— id: 833572, year: 2013, vol: 62 1 1, page: 53, stat: Journal Article,

The molecular basis for selective inhibition of unconventional mRNA splicing by an IRE1-binding small molecule
Cross, Benedict C S; Bond, Peter J; Sadowski, Pawel G; Jha, Babal Kant; Zak, Jaroslav; Goodman, Jonathan M; Silverman, Robert H; Neubert, Thomas A; Baxendale, Ian R; Ron, David; Harding, Heather P
2012 Apr;109(15):E869-E878, Proceedings of the National Academy of Sciences of the United States of America
— id: 165427, year: 2012, vol: 109, page: E869, stat: Journal Article,

Calpastatin modulates APP processing in the brains of beta-amyloid depositing but not wild-type mice
Morales-Corraliza, Jose; Berger, Jason D; Mazzella, Matthew J; Neubert, Thomas A; Ghiso, Jorge; Rao, Mala V; Staufenbiel, Matthias; Nixon, Ralph A; Mathews, Paul M
2012 Jun;33(6):1125.e9-1125.18, Neurobiology of aging
— id: 164336, year: 2012, vol: 33, page: 1125.e9, stat: Journal Article,

Conformational heterogeneity in V1/V2 domain affects the immunological properties of this region
Pinter, A.; Wu, A. Z.; Neubert, T.; Burkhart, M. D.; Honnen, W. J.
2012 SEP 13;9 2 2:-, Retrovirology
— id: 181492, year: 2012, vol: 9 2 2, page: , stat: Journal Article,

Comparison of cardiolipins from Drosophila strains with mutations in putative remodeling enzymes
Schlame, Michael; Blais, Steven; Edelman-Novemsky, Irit; Xu, Yang; Montecillo, Fleurise; Phoon, Colin K L; Ren, Mindong; Neubert, Thomas A
2012 Jul;165(5):512-519, Chemistry & physics of lipids
— id: 175766, year: 2012, vol: 165, page: 512, stat: Journal Article,

MIRG Survey 2011: Snapshot of Rapidly Evolving Label-Free Technologies Used for Characterizing Molecular Interactions
Yadav, Satya P; Bergqvist, Simon; Doyle, Michael L; Neubert, Thomas A; Yamniuk, Aaron P
2012 Sep;23(3):94-100, Journal of biomolecular techniques
— id: 179193, year: 2012, vol: 23, page: 94, stat: Journal Article,

RNA binding proteins accumulate at the postsynaptic density with synaptic activity
Zhang, Guoan; Neubert, Thomas A; Jordan, Bryen A
2012 Jan 11;32(2):599-609, Journal of neuroscience
— id: 149813, year: 2012, vol: 32, page: 599, stat: Journal Article,

MAL facilitates the incorporation of exocytic uroplakin-delivering vesicles into the apical membrane of urothelial umbrella cells
Zhou, G; Liang, FX; Romih, R; Wang, Z; Liao, Y; Ghiso, J; Luque-Garcia, JL; Neubert, TA; Kreibich, G; Alonso, MA; Schaeren-Wiemers, N; Sun, TT
2012 Apr;23(7):1354-1366, Molecular biology of the cell
— id: 165440, year: 2012, vol: 23, page: 1354, stat: Journal Article,

Metophyma: Case Report and Review of a Rare Phyma Variant
Bushnell, Philip J.; Strupp, Barbara J.; Rice, Margaret E.; Avshalumov, Marat V.; Patel, Jyoti C.; Hrabetova, Sabina; Nicholson, Charles; Jordan, Bryen A.; Fernholz, Brian D.; Neubert, Thomas A.; Ziff, Edward B.; Faltz, Lawrence L; Morley, John N; Flink, Ellen; Dameron, Peg DeHont; Al-Ibrahim, Mohamed S.; Gross, Joyce Y.; Albertson, Donna G; Rose, Ann M; Villeneuve, Anne M; Chan, Joanna L; Soliman, Sameer; Miner, Andrew G; Hughes, Stephen M; Cockerell, Clay J; Perone, Jennifer B
2011 Jun;:929; author reply 930-929; author reply 931, Dermatologic surgery
— id: 1003402, year: 2011, vol: , page: 929; author reply 930, stat: Journal Article,

Intercellular cancer collisions generate an ejected crystal comet tail effect with fractal interface embryoid body reassembly transformation
Bushnell, Philip J.; Strupp, Barbara J.; Rice, Margaret E.; Avshalumov, Marat V.; Patel, Jyoti C.; Hrabetova, Sabina; Nicholson, Charles; Jordan, Bryen A.; Fernholz, Brian D.; Neubert, Thomas A.; Ziff, Edward B.; Faltz, Lawrence L; Morley, John N; Flink, Ellen; Dameron, Peg DeHont; Al-Ibrahim, Mohamed S.; Gross, Joyce Y.; Mobasheri, Ali; Barrett-Jolley, Richard; Shakibaei, Mehdi; Canessa, Cecilia M.; Martin-Vasallo, Pablo; Mobasheri, Ali; Barrett-Jolley, Richard; Carter, Stuart D.; Martin-Vasallo, Pablo; Schulze-Tanzil, Gundula; Shakibaei, Mehdi; Albertson, Donna G; Rose, Ann M; Villeneuve, Anne M; Diaz, Jairo A; Murillo, Mauricio F; Barrero, Alvaro
2011 Aug;3:143-155, Cancer management & research
— id: 995532, year: 2011, vol: 3, page: 143, stat: Journal Article,

Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry
Darie, Costel C; Deinhardt, Katrin; Zhang, Guoan; Cardasis, Helene S; Chao, Moses V; Neubert, Thomas A
2011 Dec;11(23):4514-4528, Proteomics
— id: 145796, year: 2011, vol: 11, page: 4514, stat: Journal Article,

Neuronal growth cone retraction relies on proneurotrophin receptor signaling through rac
Deinhardt, Katrin; Kim, Taeho; Spellman, Daniel S; Mains, Richard E; Eipper, Betty A; Neubert, Thomas A; Chao, Moses V; Hempstead, Barbara L
2011 ;4(202):ra82-ra82, Science signaling
— id: 146263, year: 2011, vol: 4, page: ra82, stat: Journal Article,

Cardiac ATP-sensitive K+ channel associates with the glycolytic enzyme complex
Hong, Miyoun; Kefaloyianni, Eirini; Bao, Li; Malester, Brian; Delaroche, Diane; Neubert, Thomas A; Coetzee, William A
2011 Jul;25(7):2456-2467, FASEB journal
— id: 134908, year: 2011, vol: 25, page: 2456, stat: Journal Article,

iPRG 2011: A study on the identification of electron transfer dissociation (ETD) mass spectra
Martens, L; Askenazi, M; Bandeira, N; Chalkley, R J; Clauser, K R; Deutsch, E; Lam, H H N; McDonald, W H; Neubert, T; Rudnick, P A
2011 October 2011;22:S20-S20, Journal of biomolecular techniques
— id: 164439, year: 2011, vol: 22, page: S20, stat: Journal Article,

Catabolism of Alzheimer's amyloid-b: Implications for brain clearance and plaque deposition
McIntee F.L.; Giannoni P.; Blais S.; Neubert T.; Mathews P.; Rostagno A.; Ghiso J.
2011 ;8:?-?, Neuro-degenerative diseases
— id: 136531, year: 2011, vol: 8, page: ?, stat: Journal Article,

The pseudokinase domain of JAK2 is a dual-specificity protein kinase that negatively regulates cytokine signaling
Ungureanu, Daniela; Wu, Jinhua; Pekkala, Tuija; Niranjan, Yashavanthi; Young, Clifford; Jensen, Ole N; Xu, Chong-Feng; Neubert, Thomas A; Skoda, Radek C; Hubbard, Stevan R; Silvennoinen, Olli
2011 ;18(9):971-976, Nature structural & molecular biology
— id: 137017, year: 2011, vol: 18, page: 971, stat: Journal Article,

Conclusions from the MIRG 2010 benchmark study: Molecular interactions in a three component system and presentation of 2011 survey results on label-free technologies
Yamniuk, A P; Yadav, S P; Bergqvist, S; Doyle, M L; Eisenstein, E; Robinson, M K; Neubert, T
2011 October 2011;22:S23-S24, Journal of biomolecular techniques
— id: 164438, year: 2011, vol: 22, page: S23, stat: Journal Article,

A Novel Transcription Complex That Selectively Modulates Apoptosis of Breast Cancer Cells through Regulation of FASTKD2
Yeung, Kay T; Das, Sharmistha; Zhang, Jin; Lomniczi, Alejandro; Ojeda, Sergio R; Xu, Chong-Feng; Neubert, Thomas A; Samuels, Herbert H
2011 Jun;31(11):2287-2298, Molecular & cellular biology
— id: 132312, year: 2011, vol: 31, page: 2287, stat: Journal Article,

Study of Neurotrophin-3 Signaling in Primary Cultured Neurons using Multiplex Stable Isotope Labeling with Amino Acids in Cell Culture
Zhang, Guoan; Deinhardt, Katrin; Chao, Moses V; Neubert, Thomas A
2011 May 6;10(5):2546-2554, Journal of proteome research
— id: 132309, year: 2011, vol: 10, page: 2546, stat: Journal Article,

Comparison of three quantitative phosphoproteomic strategies to study receptor tyrosine kinase signaling
Zhang, Guoan; Neubert, Thomas A
2011 Dec 2;10(12):5454-5462, Journal of proteome research
— id: 145751, year: 2011, vol: 10, page: 5454, stat: Journal Article,

Recombinant derivatives of botulinum neurotoxin A engineered for trafficking studies and neuronal delivery
Band, Philip A; Blais, Steven; Neubert, Thomas A; Cardozo, Timothy J; Ichtchenko, Konstantin
2010 May;71(1):62-73, Protein expression & purification
— id: 107925, year: 2010, vol: 71, page: 62, stat: Journal Article,

Canonical and alternate functions of the microRNA biogenesis machinery
Chong, Mark M W; Zhang, Guoan; Cheloufi, Sihem; Neubert, Thomas A; Hannon, Gregory J; Littman, Dan R
2010 Sep 1;24(17):1951-1960, Genes & development
— id: 112041, year: 2010, vol: 24, page: 1951, stat: Journal Article,

Dok-7 regulates neuromuscular synapse formation by recruiting Crk and Crk-L
Hallock, Peter T; Xu, Chong-Feng; Park, Tae-Ju; Neubert, Thomas A; Curran, Tom; Burden, Steven J
2010 Nov 1;24(21):2451-2461, Genes & development
— id: 114184, year: 2010, vol: 24, page: 2451, stat: Journal Article,

The matrix peptide exporter HAF-1 signals a mitochondrial UPR by activating the transcription factor ZC376.7 in C. elegans
Haynes, Cole M; Yang, Yun; Blais, Steven P; Neubert, Thomas A; Ron, David
2010 Feb 26;37(4):529-540, Molecular cell
— id: 107928, year: 2010, vol: 37, page: 529, stat: Journal Article,

Matrix metalloproteinase 2 (MMP-2) degrades soluble vasculotropic amyloid-beta E22Q and L34V mutants, delaying their toxicity for human brain microvascular endothelial cells
Hernandez-Guillamon, Mar; Mawhirt, Stephanie; Fossati, Silvia; Blais, Steven; Pares, Mireia; Penalba, Anna; Boada, Merce; Couraud, Pierre-Olivier; Neubert, Thomas A; Montaner, Joan; Ghiso, Jorge; Rostagno, Agueda
2010 Aug 27;285(35):27144-27158, Journal of biological chemistry
— id: 112035, year: 2010, vol: 285, page: 27144, stat: Journal Article,

Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA
Kaneko, Syuzo; Li, Gang; Son, Jinsook; Xu, Chong-Feng; Margueron, Raphael; Neubert, Thomas A; Reinberg, Danny
2010 Dec 1;24(23):2615-2620, Genes & development
— id: 114862, year: 2010, vol: 24, page: 2615, stat: Journal Article,

Catabolism of Alzheimer's amyloid-beta: Implications for brain clearance and plaque deposition
McIntee F.L.; Neubert T.; Blais S.; Ghiso J.
2010 ;3(2):S47-S47, Clinical & translational science
— id: 111407, year: 2010, vol: 3, page: S47, stat: Journal Article,

Super-SILAC for tumors and tissues
Neubert, Thomas A; Tempst, Paul
2010 May;7(5):361-362, Nature methods
— id: 967912, year: 2010, vol: 7, page: 361, stat: Journal Article,

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance
Paulovich, Amanda G; Billheimer, Dean; Ham, Amy-Joan L; Vega-Montoto, Lorenzo; Rudnick, Paul A; Tabb, David L; Wang, Pei; Blackman, Ronald K; Bunk, David M; Cardasis, Helene L; Clauser, Karl R; Kinsinger, Christopher R; Schilling, Birgit; Tegeler, Tony J; Variyath, Asokan Mulayath; Wang, Mu; Whiteaker, Jeffrey R; Zimmerman, Lisa J; Fenyo, David; Carr, Steven A; Fisher, Susan J; Gibson, Bradford W; Mesri, Mehdi; Neubert, Thomas A; Regnier, Fred E; Rodriguez, Henry; Spiegelman, Cliff; Stein, Stephen E; Tempst, Paul; Liebler, Daniel C
2010 Feb;9(2):242-254, Molecular & cellular proteomics
— id: 114127, year: 2010, vol: 9, page: 242, stat: Journal Article,

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses
Rudnick, Paul A; Clauser, Karl R; Kilpatrick, Lisa E; Tchekhovskoi, Dmitrii V; Neta, Pedatsur; Blonder, Niksa; Billheimer, Dean D; Blackman, Ronald K; Bunk, David M; Cardasis, Helene L; Ham, Amy-Joan L; Jaffe, Jacob D; Kinsinger, Christopher R; Mesri, Mehdi; Neubert, Thomas A; Schilling, Birgit; Tabb, David L; Tegeler, Tony J; Vega-Montoto, Lorenzo; Variyath, Asokan Mulayath; Wang, Mu; Wang, Pei; Whiteaker, Jeffrey R; Zimmerman, Lisa J; Carr, Steven A; Fisher, Susan J; Gibson, Bradford W; Paulovich, Amanda G; Regnier, Fred E; Rodriguez, Henry; Spiegelman, Cliff; Tempst, Paul; Liebler, Daniel C; Stein, Stephen E
2010 Feb;9(2):225-241, Molecular & cellular proteomics
— id: 967902, year: 2010, vol: 9, page: 225, stat: Journal Article,

Myristoylation of the dual-specificity phosphatase c-JUN N-terminal kinase (JNK) stimulatory phosphatase 1 is necessary for its activation of JNK signaling and apoptosis
Schwertassek, Ulla; Buckley, Deirdre A; Xu, Chong-Feng; Lindsay, Andrew J; McCaffrey, Mary W; Neubert, Thomas A; Tonks, Nicholas K
2010 Jun;277(11):2463-2473, FEBS journal
— id: 967922, year: 2010, vol: 277, page: 2463, stat: Journal Article,

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry
Tabb, David L; Vega-Montoto, Lorenzo; Rudnick, Paul A; Variyath, Asokan Mulayath; Ham, Amy-Joan L; Bunk, David M; Kilpatrick, Lisa E; Billheimer, Dean D; Blackman, Ronald K; Cardasis, Helene L; Carr, Steven A; Clauser, Karl R; Jaffe, Jacob D; Kowalski, Kevin A; Neubert, Thomas A; Regnier, Fred E; Schilling, Birgit; Tegeler, Tony J; Wang, Mu; Wang, Pei; Whiteaker, Jeffrey R; Zimmerman, Lisa J; Fisher, Susan J; Gibson, Bradford W; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Stein, Stephen E; Tempst, Paul; Paulovich, Amanda G; Liebler, Daniel C; Spiegelman, Cliff
2010 Feb 5;9(2):761-776, Journal of proteome research
— id: 134986, year: 2010, vol: 9, page: 761, stat: Journal Article,

Iowa variant of familial Alzheimer's disease: accumulation of posttranslationally modified AbetaD23N in parenchymal and cerebrovascular amyloid deposits
Tomidokoro, Yasushi; Rostagno, Agueda; Neubert, Thomas A; Lu, Yun; Rebeck, G William; Frangione, Blas; Greenberg, Steven M; Ghiso, Jorge
2010 Apr;176(4):1841-1854, American journal of pathology
— id: 108922, year: 2010, vol: 176, page: 1841, stat: Journal Article,

Overview of peptide and protein analysis by mass spectrometry
Zhang, Guoan; Annan, Roland S; Carr, Steven A; Neubert, Thomas A
2010 Nov;Chapter 16:Unit16.1-Unit16.1, Current protocols in protein science
— id: 114845, year: 2010, vol: Chapter 16, page: Unit16.1, stat: Journal Article,

Protein quantitation using mass spectrometry
Zhang, Guoan; Ueberheide, Beatrix M; Waldemarson, Sofia; Myung, Sunnie; Molloy, Kelly; Eriksson, Jan; Chait, Brian T; Neubert, Thomas A; Fenyo, David
2010 ;673:211-222, Methods in molecular biology
— id: 112434, year: 2010, vol: 673, page: 211, stat: Journal Article,

Oxidative protein folding by an endoplasmic reticulum-localized peroxiredoxin
Zito, Ester; Melo, Eduardo Pinho; Yang, Yun; Wahlander, Asa; Neubert, Thomas A; Ron, David
2010 Dec 10;40(5):787-797, Molecular cell
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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
Addona, Terri A; Abbatiello, Susan E; Schilling, Birgit; Skates, Steven J; Mani, D R; Bunk, David M; Spiegelman, Clifford H; Zimmerman, Lisa J; Ham, Amy-Joan L; Keshishian, Hasmik; Hall, Steven C; Allen, Simon; Blackman, Ronald K; Borchers, Christoph H; Buck, Charles; Cardasis, Helene L; Cusack, Michael P; Dodder, Nathan G; Gibson, Bradford W; Held, Jason M; Hiltke, Tara; Jackson, Angela; Johansen, Eric B; Kinsinger, Christopher R; Li, Jing; Mesri, Mehdi; Neubert, Thomas A; Niles, Richard K; Pulsipher, Trenton C; Ransohoff, David; Rodriguez, Henry; Rudnick, Paul A; Smith, Derek; Tabb, David L; Tegeler, Tony J; Variyath, Asokan M; Vega-Montoto, Lorenzo J; Wahlander, Asa; Waldemarson, Sofia; Wang, Mu; Whiteaker, Jeffrey R; Zhao, Lei; Anderson, N Leigh; Fisher, Susan J; Liebler, Daniel C; Paulovich, Amanda G; Regnier, Fred E; Tempst, Paul; Carr, Steven A
2009 Jul;27(7):633-641, Nature biotechnology
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Identification and characterization of a novel nuclear protein complex Involved In nuclear hormone receptor-mediated gene regulation
Garapaty, Shivani; Xu, Chong-Feng; Trojer, Patrick; Mahajan, Muktar A; Neubert, Thomas A; Samuels, Herbert H
2009 Mar 20;284(12):7542-7552, Journal of biological chemistry
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Crystal structure of a fibroblast growth factor homologous factor (FHF) defines a conserved surface on FHFs for binding and modulation of voltage-gated sodium channels
Goetz, Regina; Dover, Katarzyna; Laezza, Fernanda; Shtraizent, Nataly; Huang, Xiao; Tchetchik, Dafna; Eliseenkova, Anna V; Xu, Chong-Feng; Neubert, Thomas A; Ornitz, David M; Goldfarb, Mitchell; Mohammadi, Moosa
2009 Jun 26;284(26):17883-17896, Journal of biological chemistry
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Homodimerization controls the fibroblast growth factor 9 subfamily's receptor binding and heparan sulfate-dependent diffusion in the extracellular matrix
Kalinina, Juliya; Byron, Sara A; Makarenkova, Helen P; Olsen, Shaun K; Eliseenkova, Anna V; Larochelle, William J; Dhanabal, Mohanraj; Blais, Steven; Ornitz, David M; Day, Loren A; Neubert, Thomas A; Pollock, Pamela M; Mohammadi, Moosa
2009 Sep;29(17):4663-4678, Molecular & cellular biology
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Dissociation of the subunits of the calcium-independent receptor of alpha-latrotoxin as a result of two-step proteolysis
Krasnoperov, Valery; Deyev, Igor E; Serova, Oxana V; Xu, Chongfeng; Lu, Yun; Buryanovsky, Leonid; Gabibov, Alexander G; Neubert, Thomas A; Petrenko, Alexander G
2009 Apr 14;48(14):3230-3238, Biochemistry
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The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate
Li, Yan; Trojer, Patrick; Xu, Chong-Feng; Cheung, Peggie; Kuo, Alex; Drury, William J 3rd; Qiao, Qi; Neubert, Thomas A; Xu, Rui-Ming; Gozani, Or; Reinberg, Danny
2009 Dec 4;284(49):34283-34295, Journal of biological chemistry
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On-membrane tryptic digestion of proteins for mass spectrometry analysis
Luque-Garcia, Jose L; Neubert, Thomas A
2009 ;536:331-341, Methods in molecular biology
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Characterization of novel oxidation products of cysteine in an active site motif peptide of PTP1B
Shetty, Vivekananda; Neubert, Thomas A
2009 Aug;20(8):1540-1548, Journal of the American Society for Mass Spectrometry
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Thioredoxin-related Protein 32 Is an Arsenite-regulated Thiol Reductase of the Proteasome 19 S Particle
Wiseman, R Luke; Chin, King-Tung; Haynes, Cole M; Stanhill, Ariel; Xu, Chong-Feng; Roguev, Assen; Krogan, Nevan J; Neubert, Thomas A; Ron, David
2009 May 29;284(22):15233-15245, Journal of biological chemistry
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Characterization of tafazzin splice variants from humans and fruit flies
Xu, Yang; Zhang, Shali; Malhotra, Ashim; Edelman-Novemsky, Irit; Ma, Jinping; Kruppa, Antonina; Cernicica, Carolina; Blais, Steven; Neubert, Thomas A; Ren, Mindong; Schlame, Michael
2009 Oct 16;284(42):29230-29239, Journal of biological chemistry
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Evaluation of the Variation in Sample Preparation for Comparative Proteomics Using Stable Isotope Labeling by Amino Acids in Cell Culture
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2009 Mar;8(3):1285-1292, Journal of proteome research
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Use of Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) for Phosphotyrosine Protein Identification and Quantitation
Zhang, Guoan; Neubert, Thomas A
2009 ;527:409-416, Methods in molecular biology
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Isoflurane inhibits cyclic adenosine monophosphate response element-binding protein phosphorylation and calmodulin translocation to the nucleus of SH-SY5Y cells
Zhang, Jin; Sutachan, Jhon-Jairo; Montoya-Gacharna, Jose; Xu, Chong-Feng; Xu, Fang; Neubert, Thomas A; Recio-Pinto, Esperanza; Blanck, Thomas J J
2009 Oct;109(4):1127-1134, Anesthesia & analgesia
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A crystallographic snapshot of tyrosine trans-phosphorylation in action
Chen, Huaibin; Xu, Chong-Feng; Ma, Jinghong; Eliseenkova, Anna V; Li, Wanqing; Pollock, Pamela M; Pitteloud, Nelly; Miller, W Todd; Neubert, Thomas A; Mohammadi, Moosa
2008 Dec 16;105(50):19660-19665, Proceedings of the National Academy of Sciences of the United States of America
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Blue native page and mass spectrometry analysis of ephrin stimulation-dependent protein-protein interactions in NG108-EphB2 cells
Darie, CC; Shetty, V; Spellman, DS; Zhang, G; Xu, C; Cardasis, HL; Blais, S; Fenyo, D; Neubert, TA
2008 ;:3-22, NATO Science for Peace & Security. Series A: Chemistry & Biology
— id: 653052, year: 2008, vol: , page: 3, stat: Journal Article,

ABRF-PRG05: de novo peptide sequence determination
Falick, Arnold M; Kowalak, Jeffrey A; Lane, William S; Phinney, Brett S; Turck, Christoph W; Weintraub, Susan T; West, Karen A; Neubert, Thomas A
2008 Sep;19(4):251-257, Journal of biomolecular techniques
— id: 96815, year: 2008, vol: 19, page: 251, stat: Journal Article,

Analysis of electroblotted proteins by mass spectrometry: protein identification after Western blotting
Luque-Garcia, Jose L; Zhou, Ge; Spellman, Daniel S; Sun, Tung-Tien; Neubert, Thomas A
2008 Feb;7(2):308-314, Molecular & cellular proteomics
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Human Proteinpedia enables sharing of human protein data
Mathivanan, Suresh; Ahmed, Mukhtar; Ahn, Natalie G; Alexandre, Hainard; Amanchy, Ramars; Andrews, Philip C; Bader, Joel S; Balgley, Brian M; Bantscheff, Marcus; Bennett, Keiryn L; Bjorling, Erik; Blagoev, Blagoy; Bose, Ron; Brahmachari, Samir K; Burlingame, Alma S; Bustelo, Xose R; Cagney, Gerard; Cantin, Greg T; Cardasis, Helene L; Celis, Julio E; Chaerkady, Raghothama; Chu, Feixia; Cole, Philip A; Costello, Catherine E; Cotter, Robert J; Crockett, David; DeLany, James P; De Marzo, Angelo M; DeSouza, Leroi V; Deutsch, Eric W; Dransfield, Eric; Drewes, Gerard; Droit, Arnaud; Dunn, Michael J; Elenitoba-Johnson, Kojo; Ewing, Rob M; Van Eyk, Jennifer; Faca, Vitor; Falkner, Jayson; Fang, Xiangming; Fenselau, Catherine; Figeys, Daniel; Gagne, Pierre; Gelfi, Cecilia; Gevaert, Kris; Gimble, Jeffrey M; Gnad, Florian; Goel, Renu; Gromov, Pavel; Hanash, Samir M; Hancock, William S; Harsha, H C; Hart, Gerald; Hays, Faith; He, Fuchu; Hebbar, Prashantha; Helsens, Kenny; Hermeking, Heiko; Hide, Winston; Hjerno, Karin; Hochstrasser, Denis F; Hofmann, Oliver; Horn, David M; Hruban, Ralph H; Ibarrola, Nieves; James, Peter; Jensen, Ole N; Jensen, Pia Honnerup; Jung, Peter; Kandasamy, Kumaran; Kheterpal, Indu; Kikuno, Reiko F; Korf, Ulrike; Korner, Roman; Kuster, Bernhard; Kwon, Min-Seok; Lee, Hyoung-Joo; Lee, Young-Jin; Lefevre, Michael; Lehvaslaiho, Minna; Lescuyer, Pierre; Levander, Fredrik; Lim, Megan S; Lobke, Christian; Loo, Joseph A; Mann, Matthias; Martens, Lennart; Martinez-Heredia, Juan; McComb, Mark; McRedmond, James; Mehrle, Alexander; Menon, Rajasree; Miller, Christine A; Mischak, Harald; Mohan, S Sujatha; Mohmood, Riaz; Molina, Henrik; Moran, Michael F; Morgan, James D; Moritz, Robert; Morzel, Martine; Muddiman, David C; Nalli, Anuradha; Navarro, J Daniel; Neubert, Thomas A; Ohara, Osamu; Oliva, Rafael; Omenn, Gilbert S; Oyama, Masaaki; Paik, Young-Ki; Pennington, Kyla; Pepperkok, Rainer; Periaswamy, Balamurugan; Petricoin, Emanuel F; Poirier, Guy G; Prasad, T S Keshava; Purvine, Samuel O; Rahiman, B Abdul; Ramachandran, Prasanna; Ramachandra, Y L; Rice, Robert H; Rick, Jens; Ronnholm, Ragna H; Salonen, Johanna; Sanchez, Jean-Charles; Sayd, Thierry; Seshi, Beerelli; Shankari, Kripa; Sheng, Shi Jun; Shetty, Vivekananda; Shivakumar, K; Simpson, Richard J; Sirdeshmukh, Ravi; Siu, K W Michael; Smith, Jeffrey C; Smith, Richard D; States, David J; Sugano, Sumio; Sullivan, Matthew; Superti-Furga, Giulio; Takatalo, Maarit; Thongboonkerd, Visith; Trinidad, Jonathan C; Uhlen, Mathias; Vandekerckhove, Joel; Vasilescu, Julian; Veenstra, Timothy D; Vidal-Taboada, Jose-Manuel; Vihinen, Mauno; Wait, Robin; Wang, Xiaoyue; Wiemann, Stefan; Wu, Billy; Xu, Tao; Yates, John R; Zhong, Jun; Zhou, Ming; Zhu, Yunping; Zurbig, Petra; Pandey, Akhilesh
2008 Feb;26(2):164-167, Nature biotechnology
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Calsyntenins Are Secretory Granule Proteins in Anterior Pituitary Gland and Pancreatic Islet {alpha} Cells
Rindler, Michael J; Xu, Chong-Feng; Gumper, Iwona; Cen, Chuan; Sonderegger, Peter; Neubert, Thomas A
2008 Apr;56(4):381-388, Journal of histochemistry & cytochemistry
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Stable isotopic labeling of amino acids in cultured primary neurons: Application to BDNF-dependent phosphotyrosine-associated signaling
Spellman, Daniel S; Deinhardt, Katrin; Darie, Costel C; Chao, Moses V; Neubert, Thomas A
2008 Jun;7(6):1067-1076, Molecular & cellular proteomics
— id: 76648, year: 2008, vol: 7, page: 1067, stat: Journal Article,

Guidelines for reporting the use of mass spectrometry in proteomics
Taylor, Chris F; Binz, Pierre-Alain; Aebersold, Ruedi; Affolter, Michel; Barkovich, Robert; Deutsch, Eric W; Horn, David M; Huhmer, Andreas; Kussmann, Martin; Lilley, Kathryn; Macht, Marcus; Mann, Matthias; Muller, Dieter; Neubert, Thomas A; Nickson, Janice; Patterson, Scott D; Raso, Roberto; Resing, Kathryn; Seymour, Sean L; Tsugita, Akira; Xenarios, Ioannis; Zeng, Rong; Julian, Randall K Jr
2008 Aug;26(8):860-861, Nature biotechnology
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Phosphorylation of liver X receptor alpha selectively regulates target gene expression in macrophages
Torra, Ines Pineda; Ismaili, Naima; Feig, Jonathan E; Xu, Chong-Feng; Cavasotto, Claudio; Pancratov, Raluca; Rogatsky, Inez; Neubert, Thomas A; Fisher, Edward A; Garabedian, Michael J
2008 Apr;28(8):2626-2636, Molecular & cellular biology
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Histoplasma capsulatum proteome response to decreased iron availability
Winters, Michael S; Spellman, Daniel S; Chan, Qilin; Gomez, Francisco J; Hernandez, Margarita; Catron, Brittany; Smulian, Alan G; Neubert, Thomas A; Deepe, George S Jr
2008 ;6:36-36, Proteome science
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Structural and biochemical characterization of the KRLB region in insulin receptor substrate-2
Wu, Jinhua; Tseng, Yolanda D; Xu, Chong-Feng; Neubert, Thomas A; White, Morris F; Hubbard, Stevan R
2008 Mar;15(3):251-258, Nature structural & molecular biology
— id: 76468, year: 2008, vol: 15, page: 251, stat: Journal Article,

Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans
Yun, Chi; Stanhill, Ariel; Yang, Yun; Zhang, Yuhong; Haynes, Cole M; Xu, Chong-Feng; Neubert, Thomas A; Mor, Adam; Philips, Mark R; Ron, David
2008 May 13;105(19):7094-7099, Proceedings of the National Academy of Sciences of the United States of America
— id: 94504, year: 2008, vol: 105, page: 7094, stat: Journal Article,

Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2008 Nov;7(11):4715-4726, Journal of proteome research
— id: 91446, year: 2008, vol: 7, page: 4715, stat: Journal Article,

Use of DNA ladders for reproducible protein fractionation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (sds-page) for quantitative proteomics
Zhang, Guoan; Fenyo, David; Neubert, Thomas A
2008 Feb;7(2):678-686, Journal of proteome research
— id: 76649, year: 2008, vol: 7, page: 678, stat: Journal Article,

ABRF-PRG04: differentiation of protein isoforms
Arnott, David; Gawinowicz, Mary Ann; Kowalak, Jeffrey A; Lane, William S; Speicher, Kaye D; Turck, Christoph W; West, Karen A; Neubert, Thomas A
2007 Apr;18(2):124-134, Journal of biomolecular techniques
— id: 72970, year: 2007, vol: 18, page: 124, stat: Journal Article,

A molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases
Chen, Huaibin; Ma, Jinghong; Li, Wanqing; Eliseenkova, Anna V; Xu, Chongfeng; Neubert, Thomas A; Miller, W Todd; Mohammadi, Moosa
2007 Sep 7;27(5):717-730, Molecular cell
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Molecular insights into the klotho-dependent, endocrine mode of action of fibroblast growth factor 19 subfamily members
Goetz, Regina; Beenken, Andrew; Ibrahimi, Omar A; Kalinina, Juliya; Olsen, Shaun K; Eliseenkova, Anna V; Xu, ChongFeng; Neubert, Thomas A; Zhang, Fuming; Linhardt, Robert J; Yu, Xijie; White, Kenneth E; Inagaki, Takeshi; Kliewer, Steven A; Yamamoto, Masaya; Kurosu, Hiroshi; Ogawa, Yasushi; Kuro-o, Makoto; Lanske, Beate; Razzaque, Mohammed S; Mohammadi, Moosa
2007 May;27(9):3417-3428, Molecular & cellular biology
— id: 71392, year: 2007, vol: 27, page: 3417, stat: Journal Article,

Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry
Luque-Garcia, Jose L; Neubert, Thomas A
2007 Jun 15;1153(1-2):259-276, Journal of chromatography
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Using SILAC to Study Cell Signaling in Neurons
Neubert, Thomas A
[S.l.] : NIH, 2007,
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Proteomic analysis of exfoliation deposits
Ovodenko, Boris; Rostagno, Agueda; Neubert, Thomas A; Shetty, Vivekananda; Thomas, Stefani; Yang, Austin; Liebmann, Jeffrey; Ghiso, Jorge; Ritch, Robert
2007 Apr;48(4):1447-1457, Investigative ophthalmology & visual science. IOVS
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Proteomic Analysis of Pancreatic Zymogen Granules: Identification of New Granule Proteins
Rindler, Michael J; Xu, Chong-Feng; Gumper, Iwona; Smith, Nora N; Neubert, Thomas A
2007 Aug;6(8):2978-2992, Journal of proteome research
— id: 72969, year: 2007, vol: 6, page: 2978, stat: Journal Article,

Characterization by tandem mass spectrometry of stable cysteine sulfenic acid in a cysteine switch peptide of matrix metalloproteinases
Shetty, Vivekananda; Spellman, Daniel S; Neubert, Thomas A
2007 Aug;18(8):1544-1551, Journal of the American Society for Mass Spectrometry
— id: 73855, year: 2007, vol: 18, page: 1544, stat: Journal Article,

The minimum information about a proteomics experiment (MIAPE)
Taylor, Chris F; Paton, Norman W; Lilley, Kathryn S; Binz, Pierre-Alain; Julian, Randall K Jr; Jones, Andrew R; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W; Dunn, Michael J; Heck, Albert J R; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A; Patterson, Scott D; Ping, Peipei; Seymour, Sean L; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M; Whitelegge, Julian P; Wilkins, Marc R; Xenarios, Ioannnis; Yates, John R 3rd; Hermjakob, Henning
2007 Aug;25(8):887-893, Nature biotechnology
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Selective enrichment and fractionation of phosphopeptides from peptide mixtures by isoelectric focusing after methyl esterification
Xu, Chong-Feng; Wang, Huaibin; Li, Daming; Kong, Xiang-Peng; Neubert, Thomas A
2007 Mar 1;79(5):2007-2014, Analytical chemistry
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New tricks for an old dog: proteomics of the PSD
Jordan, BA; Fernholz, BD; Neubert, TA; Ziff, EB
The dynamic synapse : molecular methods in ionotropic receptor biology Boca Raton, FL : CRC/Taylor & Francis, 2006,
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Use of nitrocellulose membranes for protein characterization by matrix-assisted laser desorption/ionization mass spectrometry
Luque-Garcia, Jose L; Zhou, Ge; Sun, Tung-Tien; Neubert, Thomas A
2006 Jul 15;78(14):5102-5108, Analytical chemistry
— id: 71579, year: 2006, vol: 78, page: 5102, stat: Journal Article,

Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling
Zhang, Guoan; Neubert, Thomas A
2006 Feb;5(2):401-411, Molecular & cellular proteomics
— id: 61371, year: 2006, vol: 5, page: 401, stat: Journal Article,

Use of detergents to increase selectivity of immunoprecipitation of tyrosine phosphorylated peptides prior to identification by MALDI quadrupole-TOF MS
Zhang, Guoan; Neubert, Thomas A
2006 Jan;6(2):571-578, Proteomics
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Quantitative phosphotyrosine proteomics of EphB2 signaling by stable isotope labeling with amino acids in cell culture (SILAC)
Zhang, Guoan; Spellman, Daniel S; Skolnik, Edward Y; Neubert, Thomas A
2006 Mar;5(3):581-588, Journal of proteome research
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Familial Danish dementia: co-existence of Danish and Alzheimer amyloid subunits (ADan AND A{beta}) in the absence of compact plaques
Tomidokoro, Yasushi; Lashley, Tammaryn; Rostagno, Agueda; Neubert, Thomas A; Bojsen-Moller, Marie; Braendgaard, Hans; Plant, Gordon; Holton, Janice; Frangione, Blas; Revesz, Tamas; Ghiso, Jorge
2005 Nov 4;280(44):36883-36894, Journal of biological chemistry
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Identification of phosphopeptides by MALDI Q-TOF mass spectrometry in positive and negative ion modes after methyl esterification
Xu, Chong-Feng; Lu, Yun; Ma, Jinghong; Mohammadi, Moosa; Neubert, Thomas A
2005 Jun;4(6):809-818, Molecular & cellular proteomics
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Cleavage of p75 Neurotrophin Receptor by {alpha}-Secretase and {gamma}-Secretase Requires Specific Receptor Domains
Zampieri, Niccolo; Xu, Chong-Feng; Neubert, Thomas A; Chao, Moses V
2005 Apr 15;280(15):14563-14571, Journal of biological chemistry
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Identification and verification of novel rodent postsynaptic density proteins
Jordan, Bryen A; Fernholz, Brian D; Boussac, Muriel; Xu, Chongfeng; Grigorean, Gabriela; Ziff, Edward B; Neubert, Thomas A
2004 Sep;3(9):857-871, Molecular & cellular proteomics
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The N-terminal SH4 region of the Src family kinase Fyn is modified by methylation and heterogeneous fatty acylation: role in membrane targeting, cell adhesion, and spreading
Liang, Xiquan; Lu, Yun; Wilkes, Meredith; Neubert, Thomas A; Resh, Marilyn D
2004 Feb 27;279(9):8133-8139, Journal of biological chemistry
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ABRF-PRG03: phosphorylation site determination
Arnott, David; Gawinowicz, Mary Ann; Grant, Raymond A; Neubert, Thomas A; Packman, Len C; Speicher, Kaye D; Stone, Kathryn; Turck, Christoph W
2003 Sep;14(3):205-215, Journal of biomolecular techniques
— id: 38150, year: 2003, vol: 14, page: 205, stat: Journal Article,

Facilitated forward chemical genetics using a tagged triazine library and zebrafish embryo screening
Khersonsky, Sonya M; Jung, Da-Woon; Kang, Tae-Wook; Walsh, Daniel P; Moon, Ho-Sang; Jo, Hakryul; Jacobson, Eric M; Shetty, Vivekananda; Neubert, Thomas A; Chang, Young-Tae
2003 Oct 1;125(39):11804-11805, Journal of the American Chemical Society
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The CD26-related dipeptidyl aminopeptidase-like protein DPPX is a critical component of neuronal A-type K+ channels
Nadal, Marcela S; Ozaita, Andres; Amarillo, Yimy; Vega-Saenz de Miera, Eleazar; Ma, Yuliang; Mo, Wenjun; Goldberg, Ethan M; Misumi, Yoshio; Ikehara, Yukio; Neubert, Thomas A; Rudy, Bernardo
2003 Feb 6;37(3):449-461, Neuron
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Could TCR antagonism explain associations between MHC genes and disease?
Vukmanovic, Stanislav; Neubert, Thomas A; Santori, Fabio R
2003 Apr;9(4):139-146, Trends in molecular medicine
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Protein-tyrosine Phosphatase-sigma Is a Novel Member of the Functional Family of alpha -Latrotoxin Receptors
Krasnoperov, Valery; Bittner, Mary A; Mo, Wenjun; Buryanovsky, Leonid; Neubert, Thomas A; Holz, Ronald W; Ichtchenko, Konstantin; Petrenko, Alexander G
2002 Sep 27;277(39):35887-35895, Journal of biological chemistry
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Post-translational proteolytic processing of the calcium-independent receptor of alpha-latrotoxin (CIRL), a natural chimera of the cell adhesion protein and the G protein-coupled receptor. Role of the G protein-coupled receptor proteolysis site (GPS) motif
Krasnoperov, Valery; Lu, Yun; Buryanovsky, Leonid; Neubert, Thomas A; Ichtchenko, Konstantin; Petrenko, Alexander G
2002 Nov 29;277(48):46518-46526, Journal of biological chemistry
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Mass Spectrometric Analysis of GAP-43/Neuromodulin Reveals the Presence of a Variety of Fatty Acylated Species
Liang, Xiquan; Lu, Yun; Neubert, Thomas A; Resh, Marilyn D
2002 Sep 6;277(36):33032-33040, Journal of biological chemistry
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Rare, structurally homologous self-peptides promote thymocyte positive selection
Santori, Fabio R; Kieper, William C; Brown, Stuart M; Lu, Yun; Neubert, Thomas A; Johnson, Kenneth L; Naylor, Stephen; Vukmanovic, Stanislav; Hogquist, Kristin A; Jameson, Stephen C
2002 Aug;17(2):131-142, Immunity
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Crystal Structure of the MuSK Tyrosine Kinase. Insights into Receptor Autoregulation
Till, Jeffrey H; Becerra, Manuel; Watty, Anke; Lu, Yun; Ma, Yuliang; Neubert, Thomas A; Burden, Steven J; Hubbard, Stevan R
2002 Sep;10(9):1187-1196, Structure
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Definitive Identification of Mammalian 5-Hydroxymethyluracil DNA N-Glycosylase Activity as SMUG1
Boorstein RJ; Cummings A Jr; Marenstein DR; Chan MK; Ma Y; Neubert TA; Brown SM; Teebor GW
2001 Nov 9;276(45):41991-41997, Journal of biological chemistry
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Systemic Amyloid Deposits in Familial British Dementia
Ghiso JA; Holton J; Miravalle L; Calero M; Lashley T; Vidal R; Houlden H; Wood N; Neubert TA; Rostagno A; Plant G; Revesz T; Frangione B
2001 Nov 23;276(47):43909-43914, Journal of biological chemistry
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Characterization of phosphopeptides from protein digests using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and nanoelectrospray quadrupole time-of-flight mass spectrometry
Ma Y; Lu Y; Zeng H; Ron D; Mo W; Neubert TA
2001 ;15(18):1693-1700, Rapid communications in mass spectrometry
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